Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 6.9e-59 230.3 109 100.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.5e-50 201.1 109 89.0
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.5e-50 201.1 109 89.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 4.4e-37 157.9 94 78.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 9.7e-37 156.8 105 71.4
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.7e-36 154.8 92 78.3
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.7e-36 154.8 92 78.3
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 4.8e-36 154.5 92 78.3
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-35 153.3 94 75.5
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.1e-35 153.3 94 75.5
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.1e-35 153.3 91 78.0
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-35 152.9 91 78.0
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.8e-35 152.5 92 77.2
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 4.1e-35 151.4 92 76.1
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 4.1e-35 151.4 93 75.3
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.1e-35 151.4 92 77.2
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 3.5e-34 148.3 92 75.0
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 3.5e-34 148.3 92 75.0
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-32 143.3 77 85.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.2e-32 140.6 91 71.4
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.2e-31 139.8 94 66.0
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.6e-31 139.4 89 69.7
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 2.1e-31 139.0 91 67.0
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 3.6e-31 138.3 93 68.8
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 8.0e-31 137.1 93 64.5
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.0e-30 136.7 93 64.5
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.0e-30 136.7 93 64.5
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.8e-30 136.0 92 65.2
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.3e-30 135.6 93 64.5
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.0e-30 134.8 93 66.7
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 4.0e-30 134.8 92 64.1
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 4.0e-30 134.8 89 68.5
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.2e-30 134.4 86 68.6
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.2e-30 134.4 86 68.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 6.8e-30 134.0 92 64.1
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 6.8e-30 134.0 93 63.4
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 8.8e-30 133.7 84 71.4
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.8e-30 133.7 86 68.6
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 8.8e-30 133.7 93 62.4
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.2e-29 133.3 93 63.4
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.2e-29 133.3 86 67.4
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.0e-29 132.5 91 69.2
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.0e-29 132.5 86 68.6
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 2.0e-29 132.5 86 68.6
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.0e-29 132.5 86 68.6
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.0e-29 132.5 93 63.4
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 3.4e-29 131.7 88 64.8
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.4e-29 131.3 93 62.4
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.4e-29 131.3 84 70.2
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 4.4e-29 131.3 92 64.1
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 5.7e-29 131.0 93 61.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 5.7e-29 131.0 92 63.0
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.5e-29 130.6 92 62.0
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 9.8e-29 130.2 92 63.0
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 9.8e-29 130.2 92 62.0
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 9.8e-29 130.2 90 64.4
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-28 129.8 86 66.3
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-28 129.8 86 66.3
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-28 129.8 86 66.3
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.3e-28 129.8 92 62.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.7e-28 129.4 93 62.4
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.7e-28 129.4 93 62.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.2e-28 129.0 92 62.0
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.8e-28 128.6 84 70.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 2.8e-28 128.6 89 62.9
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.8e-28 128.6 89 64.0
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.7e-28 128.3 91 64.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 4.8e-28 127.9 92 62.0
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 4.8e-28 127.9 92 64.1
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 4.8e-28 127.9 93 62.4
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.8e-28 127.9 88 63.6
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 4.8e-28 127.9 99 57.6
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 6.3e-28 127.5 91 61.5
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 8.3e-28 127.1 86 66.3
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 8.3e-28 127.1 91 59.3
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 8.3e-28 127.1 84 66.7
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.1e-27 126.7 86 65.1
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.1e-27 126.7 93 61.3
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.1e-27 126.7 86 65.1
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.4e-27 126.3 84 67.9
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.4e-27 126.3 93 60.2
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.4e-27 125.6 93 59.1
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.4e-27 125.6 93 59.1
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.4e-27 125.6 84 66.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.4e-27 125.6 84 66.7
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 3.1e-27 125.2 86 62.8
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.1e-27 125.2 91 62.6
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-27 125.2 91 62.6
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-27 125.2 91 62.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 4.1e-27 124.8 84 64.3
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 5.4e-27 124.4 86 64.0
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 7.0e-27 124.0 86 64.0
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.2e-26 123.2 93 57.0
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.2e-26 123.2 92 64.1
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.6e-26 122.9 91 59.3
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.6e-26 122.9 86 62.8
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-26 122.9 86 64.0
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.6e-26 122.9 86 62.8
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 2.7e-26 122.1 86 62.8
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.5e-26 121.7 86 61.6
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 3.5e-26 121.7 86 61.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.5e-26 121.7 98 59.2
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 4.5e-26 121.3 85 63.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 7.7e-26 120.6 84 61.9
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 6.5e-25 117.5 110 52.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 8.6e-25 117.1 61 83.6
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.1e-24 116.7 66 72.7
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.5e-24 116.3 92 54.3
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 5.5e-24 114.4 85 61.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.6e-23 112.8 63 73.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-22 109.8 82 57.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.4e-22 109.8 66 66.7
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 3.4e-21 105.1 63 68.3
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 4.4e-21 104.8 83 56.6
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 4.4e-21 104.8 67 64.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.3e-20 100.5 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.8e-19 99.4 86 52.3
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 4.1e-19 98.2 66 60.6
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 2.7e-18 95.5 88 50.0
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.5e-18 95.1 53 71.7
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 5.9e-18 94.4 66 62.1
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.3e-17 93.2 62 74.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.3e-17 92.4 62 59.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 6.6e-17 90.9 61 59.0
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.2e-15 86.7 63 63.5
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 8.0e-15 84.0 84 47.6
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.0e-14 83.6 85 45.9
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.0e-13 79.3 62 61.3
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 3.4e-13 78.6 87 43.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 1.3e-12 76.6 77 48.1
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 2.0e-10 69.3 62 48.4
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.0e-10 69.3 55 60.0
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 4.6e-10 68.2 83 44.6
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 6.6e-09 64.3 55 58.2
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.5e-08 63.2 30 80.0


User provided reference genes

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