Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p26450 Brassica napus HOM05D001837 ORTHO05D018754 6.2e-97 357.5 179 100.0
C02p26410 Brassica napus HOM05D001837 ORTHO05D040916 8.4e-54 214.2 140 78.6
BolC2t08714H Brassica oleracea HOM05D001837 ORTHO05D040916 8.4e-54 214.2 140 78.6
BcaC03g15087 Brassica carinata HOM05D001837 ORTHO05D018754 1.3e-49 200.3 153 72.5
A02p15930 Brassica napus HOM05D024281 ORTHO05D018754 1.6e-49 199.9 138 76.8
BcaB03g14723 Brassica carinata HOM05D001837 ORTHO05D003156 3.1e-48 195.7 206 53.9
BolC2t08720H Brassica oleracea HOM05D001837 ORTHO05D018754 5.9e-47 191.4 120 81.7
BcaC08g46394 Brassica carinata HOM05D001837 ORTHO05D003156 1.1e-45 187.2 191 56.0
C06p40290 Brassica napus HOM05D001837 ORTHO05D003156 1.1e-45 187.2 191 56.0
BolC6t39401H Brassica oleracea HOM05D001837 ORTHO05D003156 1.1e-45 187.2 191 56.0
BraA07t31173Z Brassica rapa HOM05D001837 ORTHO05D003156 1.1e-45 187.2 191 56.0
Sp5g24670 Schrenkiella parvula HOM05D001837 ORTHO05D003156 1.9e-45 186.4 197 54.3
A07p35880 Brassica napus HOM05D001837 ORTHO05D003156 3.2e-45 185.7 191 55.5
AL2G28680 Arabidopsis lyrata HOM05D001837 ORTHO05D003156 1.0e-38 164.1 199 50.3
Thhalv10018691m.g Eutrema salsugineum HOM05D001837 ORTHO05D003156 1.7e-38 163.3 238 43.7
AT1G69540 Arabidopsis thaliana HOM05D001837 ORTHO05D003156 3.2e-37 159.1 197 48.2
Carub.0002s1619 Capsella rubella HOM05D001837 ORTHO05D003156 3.3e-34 149.1 198 46.0
CARHR062500 Cardamine hirsuta HOM05D001837 ORTHO05D003156 2.4e-32 142.9 198 42.4
A02p15950 Brassica napus HOM05D024281 ORTHO05D018754 5.9e-23 111.7 80 71.2
BraA02t06654Z Brassica rapa HOM05D024281 ORTHO05D018754 5.9e-23 111.7 80 71.2
THA.LOC104822049 Tarenaya hassleriana HOM05D001837 ORTHO05D003156 1.7e-22 110.2 214 39.3
C02p26530 Brassica napus HOM05D024281 ORTHO05D018754 1.5e-21 107.1 80 70.0
Cpa.g.sc1.45 Carica papaya HOM05D001837 ORTHO05D003156 2.0e-15 86.7 117 43.6
TWI31G0386 Tripterygium wilfordii HOM05D001837 ORTHO05D003156 6.5e-14 81.6 144 38.2
ClCG05G024160 Citrullus lanatus HOM05D001837 ORTHO05D003156 1.1e-13 80.9 115 40.9
QL03p068624 Quercus lobata HOM05D001837 ORTHO05D003156 5.5e-13 78.6 116 39.7
Gohir.A13G076400 Gossypium hirsutum HOM05D001837 ORTHO05D003156 7.2e-13 78.2 117 39.3
Gohir.D13G076000 Gossypium hirsutum HOM05D001837 ORTHO05D003156 7.2e-13 78.2 117 39.3
Gorai.013G086600 Gossypium raimondii HOM05D001837 ORTHO05D003156 7.2e-13 78.2 117 39.3
QL05p030086 Quercus lobata HOM05D001837 ORTHO05D003156 7.2e-13 78.2 117 39.3
Duzib248G0439 Durio zibethinus HOM05D001837 ORTHO05D003156 9.4e-13 77.8 138 36.2
Atru.chr11.1764 Acer truncatum HOM05D001837 ORTHO05D003156 1.2e-12 77.4 116 37.9
Haze_11995 Corylus avellana HOM05D001837 ORTHO05D003156 1.6e-12 77.0 119 37.8
Ciclev10031963m.g Citrus clementina HOM05D001837 ORTHO05D003156 2.1e-12 76.6 112 38.4
Manes.05G103601 Manihot esculenta HOM05D001837 ORTHO05D003156 2.1e-12 76.6 119 39.5
TWI75G0812 Tripterygium wilfordii HOM05D001837 ORTHO05D003156 2.1e-12 76.6 118 42.4
CANSAT64G2867 Cannabis sativa HOM05D001837 ORTHO05D003156 2.7e-12 76.3 118 38.1
CiPaw.05G133000 Carya illinoinensis HOM05D001837 ORTHO05D003156 3.6e-12 75.9 121 40.5
RcHm_v2.0_Chr4g0439551 Rosa chinensis HOM05D001837 ORTHO05D003156 3.6e-12 75.9 119 39.5
Potri.008G088200 Populus trichocarpa HOM05D001837 ORTHO05D003156 4.7e-12 75.5 136 37.5
Duzib268G0595 Durio zibethinus HOM05D001837 ORTHO05D003156 6.1e-12 75.1 116 37.9
Gorai.005G142100 Gossypium raimondii HOM05D001837 ORTHO05D003156 6.1e-12 75.1 117 36.8
Thecc.02G343900 Theobroma cacao HOM05D001837 ORTHO05D003156 6.1e-12 75.1 116 37.1
CiPaw.06G086700 Carya illinoinensis HOM05D001837 ORTHO05D003156 8.0e-12 74.7 119 37.8
TAR622G0453 Trochodendron aralioides HOM05D001837 ORTHO05D003156 8.0e-12 74.7 116 37.9
Duzib251G0307 Durio zibethinus HOM05D001837 ORTHO05D003156 1.0e-11 74.3 150 32.0
Gohir.D02G126600 Gossypium hirsutum HOM05D001837 ORTHO05D003156 1.4e-11 73.9 117 35.9
MD16G1070700 Malus domestica HOM05D001837 ORTHO05D003156 1.4e-11 73.9 119 37.0
Prupe.1G276600 Prunus persica HOM05D001837 ORTHO05D003156 1.8e-11 73.6 118 38.1
FvH4_4g31160 Fragaria vesca HOM05D001837 ORTHO05D003156 2.3e-11 73.2 152 34.9
Gohir.A03G101800 Gossypium hirsutum HOM05D001837 ORTHO05D003156 2.3e-11 73.2 117 35.9
FAN07G1123 Fragaria x ananassa HOM05D001837 ORTHO05D003156 3.0e-11 72.8 117 38.5
TAR374G0034 Trochodendron aralioides HOM05D001837 ORTHO05D003156 3.0e-11 72.8 119 35.3
Potri.010G167300 Populus trichocarpa HOM05D001837 ORTHO05D003156 4.0e-11 72.4 136 37.5
Sabra10G0127100 Salix brachista HOM05D001837 ORTHO05D003156 4.0e-11 72.4 136 38.2
Sabra08G0065900 Salix brachista HOM05D001837 ORTHO05D003156 5.2e-11 72.0 136 36.8
MD13G1070300 Malus domestica HOM05D001837 ORTHO05D003156 6.8e-11 71.6 119 36.1
COL.COLO4_22947 Corchorus olitorius HOM05D001837 ORTHO05D003156 1.2e-10 70.9 116 35.3
CsaV3_5G032860 Cucumis sativus L. HOM05D001837 ORTHO05D003156 1.2e-10 70.9 148 33.1
Manes.01G034600 Manihot esculenta HOM05D001837 ORTHO05D003156 1.2e-10 70.9 155 34.8
MELO3C012107.2 Cucumis melo HOM05D001837 ORTHO05D003156 1.5e-10 70.5 117 36.8
THA.LOC104805166 Tarenaya hassleriana HOM05D001837 ORTHO05D003156 1.5e-10 70.5 115 42.6
Nn3g17279 Nelumbo nucifera HOM05D001837 ORTHO05D003156 2.0e-10 70.1 104 39.4
Sed0013054 Sechium edule HOM05D001837 ORTHO05D003156 2.0e-10 70.1 121 37.2
BcaC04g21508 Brassica carinata HOM05D001837 ORTHO05D003156 4.4e-10 68.9 128 35.9
C09p30950 Brassica napus HOM05D001837 ORTHO05D003156 4.4e-10 68.9 128 35.9
BolC9t55954H Brassica oleracea HOM05D001837 ORTHO05D003156 4.4e-10 68.9 128 35.9
FAN17G3096 Fragaria x ananassa HOM05D001837 ORTHO05D003156 4.4e-10 68.9 117 38.5
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 9.8e-10 67.8 123 35.8
A09p24070 Brassica napus HOM05D001837 ORTHO05D003156 9.8e-10 67.8 129 35.7
BraA09t38007Z Brassica rapa HOM05D001837 ORTHO05D003156 9.8e-10 67.8 129 35.7
Glyma.07G228900 Glycine max HOM05D001837 ORTHO05D003156 9.8e-10 67.8 124 39.5
BcaC06g31204 Brassica carinata HOM05D001837 ORTHO05D003156 3.7e-09 65.9 122 38.5
Nn4g23208 Nelumbo nucifera HOM05D001837 ORTHO05D003156 6.3e-09 65.1 116 33.6
Nn4g23210 Nelumbo nucifera HOM05D001837 ORTHO05D003156 6.3e-09 65.1 116 33.6
Aqoxy3G03432 Aquilegia oxysepala HOM05D001837 ORTHO05D003156 8.3e-09 64.7 119 33.6
AT2G03060 Arabidopsis thaliana HOM05D001837 ORTHO05D003156 8.3e-09 64.7 122 36.9
BcaC06g34022 Brassica carinata HOM05D001837 ORTHO05D003156 8.3e-09 64.7 120 37.5
A06p43320 Brassica napus HOM05D001837 ORTHO05D003156 8.3e-09 64.7 120 37.5
C07p33630 Brassica napus HOM05D001837 ORTHO05D003156 8.3e-09 64.7 120 37.5
BolC7t43873H Brassica oleracea HOM05D001837 ORTHO05D003156 8.3e-09 64.7 120 37.5
BraA06t27218Z Brassica rapa HOM05D001837 ORTHO05D003156 8.3e-09 64.7 120 37.5
Ca_18825_v3 Cicer arietinum L. HOM05D001837 ORTHO05D003156 8.3e-09 64.7 123 36.6
Lj4g0016263 Lotus japonicus HOM05D001837 ORTHO05D003156 8.3e-09 64.7 148 32.4
Lalb_Chr17g0340811 Lupinus albus HOM05D001837 ORTHO05D003156 8.3e-09 64.7 124 33.9
BcaB07g30688 Brassica carinata HOM05D001837 ORTHO05D003156 1.4e-08 63.9 130 33.8
Carub.0005s0191 Capsella rubella HOM05D001837 ORTHO05D003156 1.4e-08 63.9 123 35.8
CARHR145430 Cardamine hirsuta HOM05D001837 ORTHO05D003156 1.4e-08 63.9 123 35.8
Psat2g117920 Pisum sativum HOM05D001837 ORTHO05D003156 1.4e-08 63.9 112 32.1
Sp2g14060 Schrenkiella parvula HOM05D001837 ORTHO05D003156 1.4e-08 63.9 122 37.7
AL5G12640 Arabidopsis lyrata HOM05D001837 ORTHO05D003156 1.8e-08 63.5 122 36.1
Dinv16662 Davidia involucrata HOM05D001837 ORTHO05D003156 1.8e-08 63.5 112 33.9
Medtr5g041650 Medicago truncatula HOM05D001837 ORTHO05D003156 1.8e-08 63.5 115 33.0
Thhalv10004409m.g Eutrema salsugineum HOM05D001837 ORTHO05D003156 2.4e-08 63.2 122 37.7
FAN22G1026 Fragaria x ananassa HOM05D001837 ORTHO05D003156 2.4e-08 63.2 133 31.6
VMungo0251G2482 Vigna mungo HOM05D001837 ORTHO05D003156 2.4e-08 63.2 123 35.8
AUR62021664 Chenopodium quinoa HOM05D001837 ORTHO05D003156 4.1e-08 62.4 122 30.3
AUR62008429 Chenopodium quinoa HOM05D001837 ORTHO05D003156 5.4e-08 62.0 122 31.1
Hma1.2p1_1619F.1_g293930 Hydrangea macrophylla HOM05D001837 ORTHO05D003156 5.4e-08 62.0 134 29.9
Lalb_Chr10g0098411 Lupinus albus HOM05D001837 ORTHO05D003156 5.4e-08 62.0 124 33.9
TPR.G39160 Trifolium pratense HOM05D001837 ORTHO05D003156 5.4e-08 62.0 115 32.2
ECA246G5049 Erigeron canadensis HOM05D001837 ORTHO05D003156 1.6e-07 60.5 182 28.0
Sed0010468 Sechium edule HOM05D001837 ORTHO05D003156 4.5e-07 58.9 150 30.7
Ciclev10020575m.g Citrus clementina HOM05D001837 ORTHO05D003156 5.9e-07 58.5 133 30.1
GSVIVG01007989001 Vitis vinifera HOM05D001837 ORTHO05D003156 5.9e-07 58.5 119 30.3
Lj6A786G69 Lonicera japonica HOM05D001837 ORTHO05D003156 7.7e-07 58.2 145 28.3
vmacro16543 Vaccinium macrocarpon HOM05D001837 ORTHO05D003156 7.7e-07 58.2 129 34.1
Ca_12065_v3 Cicer arietinum L. HOM05D001837 ORTHO05D003156 1.0e-06 57.8 90 36.7
Glyma.20G034000 Glycine max HOM05D001837 ORTHO05D003156 1.0e-06 57.8 101 35.6
MBI15_g02239_MAGBIO Magnolia biondii HOM05D001378 ORTHO05D001249 1.3e-06 57.4 87 31.0
arahy.Tifrunner.gnm1.ann1.GD5YP7 Arachis hypogaea HOM05D001837 ORTHO05D003156 3.8e-06 55.8 147 29.3
arahy.Tifrunner.gnm1.ann1.PIZ1S4 Arachis hypogaea HOM05D001837 ORTHO05D003156 3.8e-06 55.8 147 29.3
Thecc.03G090700 Theobroma cacao HOM05D001837 ORTHO05D003156 5.0e-06 55.5 132 29.5
Cfa018926 Carpinus fangiana HOM05D001837 ORTHO05D003156 6.6e-06 55.1 149 24.8
Dinv34139 Davidia involucrata HOM05D001837 ORTHO05D003156 6.6e-06 55.1 113 33.6
Rhsim12G0155800 Rhododendron simsii HOM05D001837 ORTHO05D003156 6.6e-06 55.1 120 34.2
Glyma.05G025700 Glycine max HOM05D001837 ORTHO05D003156 8.6e-06 54.7 127 27.6
Lsat_1_v5_gn_9_27060 Lactuca sativa HOM05D001837 ORTHO05D003156 8.6e-06 54.7 120 35.0


User provided reference genes

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