Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p26370 Brassica napus HOM05D000321 ORTHO05D033225 1.5e-22 108.6 55 100.0
BraA02t06649Z Brassica rapa HOM05D000321 ORTHO05D033225 2.5e-20 101.3 55 92.7
Thhalv10018196m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 2.4e-15 84.7 49 85.7
Sp5g24510 Schrenkiella parvula HOM05D000321 ORTHO05D000204 2.4e-15 84.7 49 85.7
CARHR062380 Cardamine hirsuta HOM05D000321 ORTHO05D000204 5.3e-15 83.6 49 83.7
BcaB03g15892 Brassica carinata HOM05D000321 ORTHO05D000204 9.0e-15 82.8 49 83.7
A07p35730 Brassica napus HOM05D000321 ORTHO05D000204 9.0e-15 82.8 49 83.7
C06p40470 Brassica napus HOM05D000321 ORTHO05D000204 9.0e-15 82.8 49 83.7
BolC6t39385H Brassica oleracea HOM05D000321 ORTHO05D000204 9.0e-15 82.8 49 83.7
BraA07t31160Z Brassica rapa HOM05D000321 ORTHO05D000204 9.0e-15 82.8 49 83.7
AL2G28560 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 1.2e-14 82.4 49 85.7
Carub.0002s1605 Capsella rubella HOM05D000321 ORTHO05D000204 1.5e-14 82.0 49 83.7
AT1G69450 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 7.6e-14 79.7 49 79.6
Aa31LG4G11370 Aethionema arabicum HOM05D000321 ORTHO05D000204 4.2e-12 73.9 49 73.5
THA.LOC104822037 Tarenaya hassleriana HOM05D000321 ORTHO05D000204 1.6e-11 72.0 49 71.4
Eucgr.B03192 Eucalyptus grandis HOM05D000321 ORTHO05D000204 3.5e-11 70.9 48 72.9
BolC2t08711H Brassica oleracea HOM05D000321 ORTHO05D033225 6.1e-11 70.1 36 94.4
COL.COLO4_27971 Corchorus olitorius HOM05D000321 ORTHO05D000204 1.3e-10 68.9 46 71.7
Manes.05G106300 Manihot esculenta HOM05D000321 ORTHO05D000204 1.3e-10 68.9 48 68.8
QL03p069793 Quercus lobata HOM05D000321 ORTHO05D000204 1.3e-10 68.9 48 68.8
CiPaw.06G088800 Carya illinoinensis HOM05D000321 ORTHO05D000204 1.8e-10 68.6 48 68.8
Aa31LG4G11380 Aethionema arabicum HOM05D000321 ORTHO05D000204 3.0e-10 67.8 49 67.3
Ciclev10030873m.g Citrus clementina HOM05D000321 ORTHO05D000204 3.0e-10 67.8 46 71.7
Sabra08G0068300 Salix brachista HOM05D000321 ORTHO05D000204 3.9e-10 67.4 48 68.8
Gohir.A13G078100 Gossypium hirsutum HOM05D000321 ORTHO05D000204 5.1e-10 67.0 48 68.8
Gohir.D13G078100 Gossypium hirsutum HOM05D000321 ORTHO05D000204 5.1e-10 67.0 48 68.8
Gorai.013G089300 Gossypium raimondii HOM05D000321 ORTHO05D000204 5.1e-10 67.0 48 68.8
Prupe.1G279800 Prunus persica HOM05D000321 ORTHO05D000204 5.1e-10 67.0 48 68.8
FAN22G1642 Fragaria x ananassa HOM05D000321 ORTHO05D000204 6.7e-10 66.6 48 66.7
CsaV3_5G033040 Cucumis sativus L. HOM05D000321 ORTHO05D000204 8.7e-10 66.2 49 65.3
FvH4_4g30740 Fragaria vesca HOM05D000321 ORTHO05D000204 8.7e-10 66.2 48 66.7
FAN07G1919 Fragaria x ananassa HOM05D000321 ORTHO05D000204 8.7e-10 66.2 48 66.7
FAN12G1879 Fragaria x ananassa HOM05D000321 ORTHO05D000204 8.7e-10 66.2 48 66.7
FAN17G2904 Fragaria x ananassa HOM05D000321 ORTHO05D000204 8.7e-10 66.2 48 66.7
PGR102G0487 Punica granatum HOM05D000321 ORTHO05D000204 8.7e-10 66.2 48 66.7
RcHm_v2.0_Chr4g0439131 Rosa chinensis HOM05D000321 ORTHO05D000204 8.7e-10 66.2 48 66.7
Thecc.02G339400 Theobroma cacao HOM05D000321 ORTHO05D000204 8.7e-10 66.2 46 67.4
Potri.008G091200 Populus trichocarpa HOM05D000321 ORTHO05D000204 1.9e-09 65.1 48 66.7
ClCG05G024000 Citrullus lanatus HOM05D000321 ORTHO05D000204 2.5e-09 64.7 49 65.3
Potri.010G164100 Populus trichocarpa HOM05D000321 ORTHO05D000204 2.5e-09 64.7 48 64.6
arahy.Tifrunner.gnm1.ann1.23DMEQ Arachis hypogaea HOM05D000321 ORTHO05D000204 3.3e-09 64.3 48 68.8
MELO3C012126.2 Cucumis melo HOM05D000321 ORTHO05D000204 3.3e-09 64.3 49 65.3
GSVIVG01012531001 Vitis vinifera HOM05D000321 ORTHO05D000204 3.3e-09 64.3 46 67.4
Atru.chr11.1718 Acer truncatum HOM05D000321 ORTHO05D000204 4.3e-09 63.9 46 67.4
arahy.Tifrunner.gnm1.ann1.Q3JLYL Arachis hypogaea HOM05D000321 ORTHO05D000204 5.7e-09 63.5 46 71.7
Sed0012928 Sechium edule HOM05D000321 ORTHO05D000204 7.4e-09 63.2 49 63.3
arahy.Tifrunner.gnm1.ann1.ZVD3U0 Arachis hypogaea HOM05D000321 ORTHO05D000204 9.7e-09 62.8 47 70.2
Manes.01G032400 Manihot esculenta HOM05D000321 ORTHO05D000204 9.7e-09 62.8 46 67.4
TPR.G34040 Trifolium pratense HOM05D000321 ORTHO05D000204 9.7e-09 62.8 49 63.3
Cc07_g03660 Coffea canephora HOM05D000321 ORTHO05D000204 1.3e-08 62.4 48 66.7
Dinv16689 Davidia involucrata HOM05D000321 ORTHO05D000204 1.3e-08 62.4 48 66.7
Medtr4g082340 Medicago truncatula HOM05D000321 ORTHO05D000204 1.3e-08 62.4 49 65.3
arahy.Tifrunner.gnm1.ann1.4U9NHI Arachis hypogaea HOM05D000321 ORTHO05D000204 1.6e-08 62.0 47 68.1
Cfa008928 Carpinus fangiana HOM05D000321 ORTHO05D000204 1.6e-08 62.0 46 65.2
Sabra10G0124600 Salix brachista HOM05D000321 ORTHO05D000204 1.6e-08 62.0 48 62.5
Ca_23885_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 2.2e-08 61.6 46 67.4
Lalb_Chr05g0220211 Lupinus albus HOM05D000321 ORTHO05D000204 2.2e-08 61.6 50 66.0
Rhsim08G0072300 Rhododendron simsii HOM05D000321 ORTHO05D000204 2.2e-08 61.6 48 64.6
unitig_736.g22261 Utricularia gibba HOM05D000321 ORTHO05D000204 2.2e-08 61.6 48 64.6
arahy.Tifrunner.gnm1.ann1.V2J7EE Arachis hypogaea HOM05D000321 ORTHO05D000204 2.8e-08 61.2 46 69.6
CAN.G206.179 Capsicum annuum HOM05D000321 ORTHO05D000204 2.8e-08 61.2 48 62.5
CANSAT64G2940 Cannabis sativa HOM05D000321 ORTHO05D000204 3.7e-08 60.8 46 67.4
Eucgr.I02009 Eucalyptus grandis HOM05D000321 ORTHO05D000204 3.7e-08 60.8 49 61.2
Dinv11502 Davidia involucrata HOM05D000321 ORTHO05D000204 4.8e-08 60.5 48 64.6
Lj2g0013080 Lotus japonicus HOM05D000321 ORTHO05D000204 4.8e-08 60.5 48 62.5
SGA_v2.0_scaffold413G51173 Striga asiatica HOM05D000321 ORTHO05D000204 4.8e-08 60.5 48 62.5
arahy.Tifrunner.gnm1.ann1.3DFG0M Arachis hypogaea HOM05D000321 ORTHO05D000204 6.3e-08 60.1 46 67.4
Cfa007593 Carpinus fangiana HOM05D000321 ORTHO05D000204 6.3e-08 60.1 49 63.3
Lalb_Chr02g0159151 Lupinus albus HOM05D000321 ORTHO05D000204 6.3e-08 60.1 46 67.4
CSS0026837 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 8.2e-08 59.7 48 64.6
Lj2g0018870 Lotus japonicus HOM05D000321 ORTHO05D000204 8.2e-08 59.7 46 67.4
Lalb_Chr04g0258571 Lupinus albus HOM05D000321 ORTHO05D000204 8.2e-08 59.7 47 63.8
Lalb_Chr21g0318561 Lupinus albus HOM05D000321 ORTHO05D000204 8.2e-08 59.7 46 65.2
Nn3g17333 Nelumbo nucifera HOM05D000321 ORTHO05D000204 8.2e-08 59.7 46 60.9
Migut.H00674 Erythranthe guttata HOM05D000321 ORTHO05D000204 1.1e-07 59.3 48 62.5
Lj4g0018299 Lotus japonicus HOM05D000321 ORTHO05D000204 1.1e-07 59.3 49 63.3
Solyc02g088300.3 Solanum lycopersicum HOM05D000321 ORTHO05D000204 1.1e-07 59.3 48 60.4
Sopen02g032990 Solanum pennellii HOM05D000321 ORTHO05D000204 1.1e-07 59.3 48 60.4
PGSC0003DMG400001342 Solanum tuberosum HOM05D000321 ORTHO05D000204 1.1e-07 59.3 48 60.4
BcaC05g30381 Brassica carinata HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 65.2
A05p44860 Brassica napus HOM05D000321 ORTHO05D002202 1.4e-07 58.9 46 65.2
C09p75440 Brassica napus HOM05D000321 ORTHO05D002202 1.4e-07 58.9 46 65.2
BolC5t35116H Brassica oleracea HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 65.2
BraA05t23172Z Brassica rapa HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 65.2
CiPaw.03G023500 Carya illinoinensis HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 65.2
Nn4g23283 Nelumbo nucifera HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 63.0
Psat7g135720 Pisum sativum HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 63.0
VMungo1215G0940 Vigna mungo HOM05D000321 ORTHO05D000204 1.4e-07 58.9 46 65.2
CDE11G0815 Ceratophyllum demersum HOM05D000321 ORTHO05D000204 1.8e-07 58.5 47 59.6
Lj3C1033G21 Lonicera japonica HOM05D000321 ORTHO05D000204 1.8e-07 58.5 48 60.4
MD16G1067100 Malus domestica HOM05D000321 ORTHO05D000204 1.8e-07 58.5 48 60.4
Peaxi162Scf00166g01048 Petunia axillaris HOM05D000321 ORTHO05D000204 1.8e-07 58.5 48 60.4
Phvul.002G092500 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 1.8e-07 58.5 46 65.2
SalBow1G4242 Salvia bowleyana HOM05D000321 ORTHO05D000204 1.8e-07 58.5 48 58.3
VMungo0464G0278 Vigna mungo HOM05D000321 ORTHO05D000204 1.8e-07 58.5 46 65.2
Actinidia17566 Actinidia chinensis HOM05D000321 ORTHO05D000204 2.4e-07 58.2 48 60.4
arahy.Tifrunner.gnm1.ann1.8Z1SZG Arachis hypogaea HOM05D000321 ORTHO05D000204 2.4e-07 58.2 47 61.7
arahy.Tifrunner.gnm1.ann1.TQQ1ST Arachis hypogaea HOM05D000321 ORTHO05D000204 2.4e-07 58.2 47 61.7
Ca_04878_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 2.4e-07 58.2 46 60.9
Glyma.19G025900 Glycine max HOM05D000321 ORTHO05D000204 2.4e-07 58.2 46 65.2
MD13G1068300 Malus domestica HOM05D000321 ORTHO05D000204 2.4e-07 58.2 47 61.7
Nitab4.5_0000568g0220 Nicotiana tabacum HOM05D000321 ORTHO05D000204 2.4e-07 58.2 48 58.3
Hund30276 Selenicereus undatus HOM05D000321 ORTHO05D000204 2.4e-07 58.2 46 65.2
Hund30423 Selenicereus undatus HOM05D000321 ORTHO05D000204 2.4e-07 58.2 46 65.2
THA.LOC104802960 Tarenaya hassleriana HOM05D000321 ORTHO05D000204 2.4e-07 58.2 47 61.7
TPR.G39978 Trifolium pratense HOM05D000321 ORTHO05D000204 2.4e-07 58.2 46 63.0
MSTRG.23914 Avicennia marina HOM05D000321 ORTHO05D000204 3.1e-07 57.8 48 62.5
Glyma.01G052900 Glycine max HOM05D000321 ORTHO05D000204 3.1e-07 57.8 46 67.4
BcaC01g04501 Brassica carinata HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 63.0
A03p32700 Brassica napus HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 63.0
C03p39800 Brassica napus HOM05D000321 ORTHO05D002202 4.1e-07 57.4 46 63.0
BolC3t16244H Brassica oleracea HOM05D001730 ORTHO05D002202 4.1e-07 57.4 46 63.0
BraA03t12439Z Brassica rapa HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 63.0
COL.COLO4_12229 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 63.0
Thhalv10020163m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 63.0
Glyma.02G111500 Glycine max HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 65.2
Sp3g01010 Schrenkiella parvula HOM05D000321 ORTHO05D000204 4.1e-07 57.4 46 63.0
Hund05855 Selenicereus undatus HOM05D000321 ORTHO05D000204 4.1e-07 57.4 49 61.2
Sc14g0008070 Simmondsia chinensis HOM05D000321 ORTHO05D000204 4.1e-07 57.4 48 62.5
VMungo1383G0262 Vigna mungo HOM05D000321 ORTHO05D000204 4.1e-07 57.4 47 63.8
MSTRG.3028 Avicennia marina HOM05D000321 ORTHO05D000204 5.3e-07 57.0 46 60.9
CARHR075940 Cardamine hirsuta HOM05D000321 ORTHO05D000204 5.3e-07 57.0 46 63.0
ECA232G3270 Erigeron canadensis HOM05D000321 ORTHO05D000204 5.3e-07 57.0 48 56.2
Glyma.18G262600 Glycine max HOM05D000321 ORTHO05D000204 5.3e-07 57.0 45 64.4
Aa31LG5G12520 Aethionema arabicum HOM05D000321 ORTHO05D000204 6.9e-07 56.6 46 60.9
AL3G11150 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 6.9e-07 56.6 46 60.9
AT3G01100 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 6.9e-07 56.6 46 60.9
RcHm_v2.0_Chr2g0167091 Rosa chinensis HOM05D000321 ORTHO05D000204 6.9e-07 56.6 46 60.9
HanXRQChr09g0264291 Helianthus annuus HOM05D000321 ORTHO05D000204 9.0e-07 56.2 48 54.2
Lsat_1_v5_gn_4_169820 Lactuca sativa HOM05D000321 ORTHO05D000204 9.0e-07 56.2 48 56.2
Medtr6g012870 Medicago truncatula HOM05D000321 ORTHO05D000204 9.0e-07 56.2 46 60.9
PSO017G5518 Papaver somniferum HOM05D000321 ORTHO05D000204 9.0e-07 56.2 46 60.9
Phvul.004G031700 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 9.0e-07 56.2 46 63.0
Prupe.3G263200 Prunus persica HOM05D000321 ORTHO05D000204 9.0e-07 56.2 50 58.0
PGR004G2328 Punica granatum HOM05D000321 ORTHO05D000204 9.0e-07 56.2 46 60.9
vmacro18170 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 9.0e-07 56.2 48 56.2
GSVIVG01011464001 Vitis vinifera HOM05D000321 ORTHO05D000204 9.0e-07 56.2 46 58.7
Hma1.2p1_0157F.1_g069270 Hydrangea macrophylla HOM05D000321 ORTHO05D000204 1.2e-06 55.8 48 60.4
PSO478G3969 Papaver somniferum HOM05D000321 ORTHO05D000204 1.2e-06 55.8 46 60.9
Sc10g0003390 Simmondsia chinensis HOM05D000321 ORTHO05D000204 1.2e-06 55.8 46 60.9
Thecc.04G087700 Theobroma cacao HOM05D000321 ORTHO05D000204 1.2e-06 55.8 46 63.0
TAR629G0079 Trochodendron aralioides HOM05D000321 ORTHO05D000204 1.2e-06 55.8 46 58.7
CANSAT64G1997 Cannabis sativa HOM05D000321 ORTHO05D000204 1.5e-06 55.5 46 60.9
Carub.0003s0106 Capsella rubella HOM05D000321 ORTHO05D000204 1.5e-06 55.5 44 61.4
Lsat_1_v5_gn_4_169800 Lactuca sativa HOM05D000321 ORTHO05D000204 1.5e-06 55.5 48 56.2
Lj1g0008945 Lotus japonicus HOM05D000321 ORTHO05D000204 1.5e-06 55.5 47 61.7
QL02p084921 Quercus lobata HOM05D000321 ORTHO05D000204 1.5e-06 55.5 46 60.9
Hund15582 Selenicereus undatus HOM05D000321 ORTHO05D000204 1.5e-06 55.5 46 56.5
Actinidia31961 Actinidia chinensis HOM05D000321 ORTHO05D000204 2.0e-06 55.1 44 61.4
Cc11_g12570 Coffea canephora HOM05D000321 ORTHO05D000204 2.0e-06 55.1 48 54.2
FvH4_6g47900 Fragaria vesca HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 58.7
FAN02G0467 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 58.7
FAN09G1734 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 58.7
FAN14G1342 Fragaria x ananassa HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 58.7
MD09G1055900 Malus domestica HOM05D000321 ORTHO05D000204 2.0e-06 55.1 50 56.0
PSO017G0381 Papaver somniferum HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 58.7
Psat1g070400 Pisum sativum HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 58.7
RcHm_v2.0_Chr2g0167101 Rosa chinensis HOM05D000321 ORTHO05D000204 2.0e-06 55.1 49 57.1
TPR.G19933 Trifolium pratense HOM05D000321 ORTHO05D000204 2.0e-06 55.1 46 60.9
ATR0730G010 Amborella trichopoda HOM05D000321 ORTHO05D000204 2.6e-06 54.7 45 62.2
Psat2g126560 Pisum sativum HOM05D000321 ORTHO05D000204 2.6e-06 54.7 46 60.9
CSS0022208 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 3.4e-06 54.3 44 61.4
CDE02G0584 Ceratophyllum demersum HOM05D000321 ORTHO05D000204 3.4e-06 54.3 47 57.4
Phvul.008G039200 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 3.4e-06 54.3 45 62.2
Rhsim12G0078500 Rhododendron simsii HOM05D000321 ORTHO05D000204 3.4e-06 54.3 44 61.4
vmacro01344 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 4.5e-06 53.9 44 59.1
Actinidia19932 Actinidia chinensis HOM05D000321 ORTHO05D000204 5.9e-06 53.5 44 63.6
Medtr7g011610 Medicago truncatula HOM05D000321 ORTHO05D000204 5.9e-06 53.5 47 57.4
PSO478G2326 Papaver somniferum HOM05D000321 ORTHO05D000204 7.7e-06 53.1 46 58.7
Potri.004G115800 Populus trichocarpa HOM05D000321 ORTHO05D000204 7.7e-06 53.1 47 57.4
Sabra04G0067900 Salix brachista HOM05D000321 ORTHO05D000204 7.7e-06 53.1 46 58.7


User provided reference genes

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