Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 9.1e-40 166.4 81 100.0
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-39 166.0 81 98.8
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 1.2e-39 166.0 81 98.8
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 3.6e-36 154.5 81 92.6
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 3.6e-36 154.5 81 92.6
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.0e-35 152.9 81 92.6
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-35 152.5 81 91.4
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 2.3e-35 151.8 77 94.8
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 1.5e-34 149.1 77 93.5
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 2.0e-34 148.7 77 93.5
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 1.3e-33 146.0 77 93.5
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.8e-33 144.8 77 90.9
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 4.9e-33 144.1 77 90.9
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 6.3e-33 143.7 79 88.6
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 6.3e-33 143.7 79 88.6
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 6.3e-33 143.7 79 88.6
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.1e-32 141.4 77 89.6
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 5.4e-32 140.6 78 91.0
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 7.0e-32 140.2 77 87.0
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 1.2e-31 139.4 79 86.1
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 1.2e-31 139.4 79 86.1
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.6e-31 139.0 78 87.2
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.6e-31 139.0 78 87.2
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 6.6e-30 133.7 80 81.2
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.5e-29 132.5 77 83.1
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 4.3e-29 131.0 77 77.9
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 4.3e-29 131.0 78 83.3
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 4.3e-29 131.0 78 83.3
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 4.3e-29 131.0 77 77.9
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 5.6e-29 130.6 77 77.9
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 2.1e-28 128.6 77 76.6
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 2.8e-28 128.3 77 75.3
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 4.7e-28 127.5 78 82.1
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 4.7e-28 127.5 78 82.1
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 4.7e-28 127.5 78 82.1
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.0e-27 126.3 77 74.0
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.8e-27 125.6 77 74.0
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 8.9e-27 123.2 77 79.2
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 1.5e-26 122.5 77 75.3
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.5e-26 122.5 77 75.3
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 7.5e-26 120.2 77 72.7
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 7.5e-26 120.2 77 72.7
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-25 119.0 77 72.7
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 2.7e-23 111.7 77 70.1
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 9.5e-21 103.2 77 68.8
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 1.2e-20 102.8 79 67.1
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.1e-19 98.2 81 64.2
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 3.1e-19 98.2 82 64.6
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 5.2e-19 97.4 79 63.3
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 5.2e-19 97.4 81 63.0
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.2e-18 96.3 82 62.2
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 1.5e-18 95.9 79 60.8
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.5e-18 95.9 79 62.0
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.5e-18 95.9 79 62.0
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.5e-18 95.9 79 64.6
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.5e-18 95.9 79 64.6
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.0e-18 95.5 81 61.7
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 2.0e-18 95.5 86 62.8
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.6e-18 95.1 79 62.0
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 3.4e-18 94.7 89 61.8
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 3.4e-18 94.7 80 61.2
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.4e-18 94.7 82 62.2
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 3.4e-18 94.7 78 62.8
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 4.4e-18 94.4 94 56.4
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 4.4e-18 94.4 82 62.2
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.8e-18 94.0 78 65.4
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.8e-18 94.0 78 65.4
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 5.8e-18 94.0 78 65.4
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 7.5e-18 93.6 79 62.0
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 7.5e-18 93.6 81 61.7
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 9.8e-18 93.2 82 59.8
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.3e-17 92.8 79 63.3
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 1.3e-17 92.8 85 61.2
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.7e-17 92.4 89 58.4
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.7e-17 92.4 89 59.6
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 2.2e-17 92.0 79 62.0
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 2.2e-17 92.0 87 58.6
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.2e-17 92.0 82 59.8
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.2e-17 92.0 82 59.8
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 2.2e-17 92.0 89 60.7
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 3.7e-17 91.3 77 62.3
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 3.7e-17 91.3 79 62.0
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 4.9e-17 90.9 77 64.9
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.9e-17 90.9 82 58.5
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.4e-17 90.5 86 61.6
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 6.4e-17 90.5 81 59.3
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 8.3e-17 90.1 88 59.1
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.1e-16 89.7 89 58.4
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.4e-16 89.4 85 61.2
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 1.4e-16 89.4 78 61.5
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.4e-16 89.4 88 56.8
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 1.9e-16 89.0 82 56.1
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.4e-16 88.6 88 59.1
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.4e-16 88.6 86 58.1
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 2.4e-16 88.6 82 58.5
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 2.4e-16 88.6 86 60.5
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 3.2e-16 88.2 88 58.0
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 3.2e-16 88.2 78 60.3
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 4.1e-16 87.8 82 58.5
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 4.1e-16 87.8 79 62.0
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 4.1e-16 87.8 73 63.0
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 4.1e-16 87.8 76 60.5
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 5.4e-16 87.4 88 59.1
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 7.0e-16 87.0 78 59.0
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 7.0e-16 87.0 88 58.0
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.2e-15 86.3 82 57.3
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.6e-15 85.9 65 69.2
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.6e-15 85.9 89 56.2
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.7e-15 85.1 91 53.8
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 2.7e-15 85.1 82 57.3
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 2.7e-15 85.1 82 57.3
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.5e-15 84.7 79 59.5
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 3.5e-15 84.7 86 59.3
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.5e-15 84.7 82 56.1
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 3.5e-15 84.7 88 54.5
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 3.5e-15 84.7 80 53.8
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 3.5e-15 84.7 88 56.8
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 4.6e-15 84.3 72 62.5
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 6.0e-15 84.0 87 57.5
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 7.8e-15 83.6 79 58.2
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 7.8e-15 83.6 89 56.2
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 1.3e-14 82.8 85 57.6
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 1.3e-14 82.8 79 57.0
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 1.7e-14 82.4 91 51.6
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 3.0e-14 81.6 79 57.0
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 3.0e-14 81.6 79 57.0
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 3.0e-14 81.6 88 55.7
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 3.9e-14 81.3 82 54.9
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 5.0e-14 80.9 85 54.1
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 5.0e-14 80.9 84 52.4
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 5.0e-14 80.9 88 53.4
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.6e-14 80.5 77 53.2
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 6.6e-14 80.5 88 55.7
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 8.6e-14 80.1 80 56.2
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 8.6e-14 80.1 82 52.4
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 8.6e-14 80.1 78 60.3
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.5e-13 79.3 82 51.2
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.9e-13 79.0 78 59.0
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.9e-13 79.0 77 53.2
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 3.3e-13 78.2 86 52.3
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 3.3e-13 78.2 83 51.8
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 3.3e-13 78.2 88 50.0
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 4.3e-13 77.8 82 56.1
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 4.3e-13 77.8 68 61.8
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 5.6e-13 77.4 77 55.8
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 5.6e-13 77.4 93 50.5
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 7.3e-13 77.0 77 57.1
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 9.5e-13 76.6 88 55.7
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 9.5e-13 76.6 87 49.4
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 9.5e-13 76.6 82 52.4
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 9.5e-13 76.6 76 59.2
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 9.5e-13 76.6 85 57.6
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 1.2e-12 76.3 80 55.0
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.2e-12 76.3 81 51.9
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.6e-12 75.9 85 51.8
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.6e-12 75.9 92 51.1
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.6e-12 75.9 88 50.0
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.6e-12 75.9 88 48.9
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.1e-12 75.5 77 49.4
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.1e-12 75.5 59 64.4
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.8e-12 75.1 82 51.2
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 3.6e-12 74.7 82 50.0
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.1e-11 73.2 83 53.0
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 1.1e-11 73.2 85 52.9
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 5.2e-11 70.9 81 49.4
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 1.2e-10 69.7 84 48.8
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.0e-10 68.9 86 51.2
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 3.4e-10 68.2 54 66.7
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 3.4e-10 68.2 54 66.7
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 3.4e-10 68.2 82 47.6
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 4.4e-10 67.8 57 57.9
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 7.5e-10 67.0 79 50.6
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.9e-09 65.1 86 48.8
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 2.9e-09 65.1 78 51.3
BraA07t30345Z Brassica rapa HOM05D003613 ORTHO05D004055 8.3e-09 63.5 39 71.8
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 8.3e-09 63.5 65 52.3
C06p29730 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-08 63.2 37 75.7
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.4e-08 62.8 86 47.7
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 1.4e-08 62.8 70 47.1
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 9.2e-08 60.1 79 49.4
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 2.7e-07 58.5 54 61.1
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 6.0e-07 57.4 62 51.6
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 2.3e-06 55.5 69 46.4
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 8.6e-06 53.5 51 54.9


User provided reference genes

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