Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p25070 Brassica napus HOM05D000108 ORTHO05D014103 2.1e-77 292.4 155 100.0
BcaC06g33995 Brassica carinata HOM05D000108 ORTHO05D014103 1.4e-76 289.7 155 99.4
C07p33910 Brassica napus HOM05D000108 ORTHO05D014103 1.4e-76 289.7 155 99.4
BolC7t43905H Brassica oleracea HOM05D000108 ORTHO05D014103 1.1e-73 280.0 152 98.0
BcaC02g07526 Brassica carinata HOM05D000108 ORTHO05D001149 1.1e-62 243.4 152 84.9
BraA04t18334Z Brassica rapa HOM05D000108 ORTHO05D001149 2.5e-62 242.3 152 84.9
BcaB06g28989 Brassica carinata HOM05D000108 ORTHO05D001149 4.3e-62 241.5 152 84.9
C04p65890 Brassica napus HOM05D000108 ORTHO05D001149 2.8e-61 238.8 152 82.9
A04p28560 Brassica napus HOM05D000108 ORTHO05D001149 1.4e-60 236.5 153 83.7
BolC4t28093H Brassica oleracea HOM05D000108 ORTHO05D001149 6.8e-60 234.2 152 81.6
Sp4g19760 Schrenkiella parvula HOM05D000108 ORTHO05D001149 1.5e-59 233.0 152 82.2
C09p31480 Brassica napus HOM05D000108 ORTHO05D014103 9.9e-59 230.3 155 82.6
BolC9t56007H Brassica oleracea HOM05D000108 ORTHO05D014103 9.9e-59 230.3 155 82.6
C09p40020 Brassica napus HOM05D000108 ORTHO05D014103 1.1e-57 226.9 155 81.9
BolC9t56899H Brassica oleracea HOM05D000108 ORTHO05D014103 1.1e-57 226.9 155 81.9
BcaC04g21465 Brassica carinata HOM05D000108 ORTHO05D014103 4.6e-56 221.5 151 82.1
BcaC04g20709 Brassica carinata HOM05D000108 ORTHO05D014103 5.1e-55 218.0 151 81.5
Carub.0004s1934 Capsella rubella HOM05D000108 ORTHO05D001149 6.6e-55 217.6 152 76.3
Thhalv10016170m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 5.2e-52 208.0 152 73.0
AL4G33810 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 6.8e-52 207.6 151 74.8
AT2G37420 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.5e-51 206.5 150 74.0
CARHR132170 Cardamine hirsuta HOM05D000108 ORTHO05D001149 3.8e-50 201.8 154 70.1
BcaC02g08397 Brassica carinata HOM05D000108 ORTHO05D014103 1.7e-42 176.4 152 67.1
BcaB04g19587 Brassica carinata HOM05D000108 ORTHO05D014103 7.1e-41 171.0 114 82.5
Aa31LG5G22850 Aethionema arabicum HOM05D000108 ORTHO05D001149 2.5e-38 162.5 152 59.2
THA.LOC104806586 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 7.9e-32 141.0 150 52.7
Thecc.05G045800 Theobroma cacao HOM05D000108 ORTHO05D001149 1.6e-24 116.7 156 42.3
Dinv35646 Davidia involucrata HOM05D000108 ORTHO05D001149 1.9e-22 109.8 155 41.9
MELO3C003101.2 Cucumis melo HOM05D000108 ORTHO05D001149 5.7e-22 108.2 153 45.1
BcaC02g07525 Brassica carinata HOM05D000108 ORTHO05D014103 1.3e-21 107.1 106 59.4
CsaV3_4G024680 Cucumis sativus L. HOM05D000108 ORTHO05D001149 1.6e-21 106.7 153 43.8
QL07p046713 Quercus lobata HOM05D000108 ORTHO05D001149 1.6e-21 106.7 109 51.4
Duzib106G1757 Durio zibethinus HOM05D000108 ORTHO05D001149 2.1e-21 106.3 161 39.1
Manes.08G076715 Manihot esculenta HOM05D000108 ORTHO05D001149 4.8e-21 105.1 158 39.2
Atru.chr8.1922 Acer truncatum HOM05D000108 ORTHO05D001149 2.4e-20 102.8 155 36.1
Gohir.A04G079500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.0e-20 102.1 163 36.8
Ciclev10010956m.g Citrus clementina HOM05D000108 ORTHO05D001149 5.3e-20 101.7 156 41.7
Cfa017438 Carpinus fangiana HOM05D000108 ORTHO05D001149 9.0e-20 100.9 108 49.1
Haze_20725 Corylus avellana HOM05D000108 ORTHO05D001149 2.6e-19 99.4 126 44.4
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 4.5e-19 98.6 156 42.3
Gorai.009G423900 Gossypium raimondii HOM05D000108 ORTHO05D001149 4.5e-19 98.6 162 36.4
VMungo0720G0253 Vigna mungo HOM05D000108 ORTHO05D001149 7.6e-19 97.8 145 43.4
CiPaw.09G187900 Carya illinoinensis HOM05D000108 ORTHO05D001149 1.0e-18 97.4 153 41.2
Lj5g0001196 Lotus japonicus HOM05D000108 ORTHO05D001149 1.0e-18 97.4 151 37.7
TWI74G1599 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 1.7e-18 96.7 161 38.5
Potri.006G082900 Populus trichocarpa HOM05D000108 ORTHO05D001149 2.2e-18 96.3 159 41.5
Migut.J00371 Erythranthe guttata HOM05D000108 ORTHO05D001149 5.0e-18 95.1 150 40.0
Psat6g068920 Pisum sativum HOM05D000108 ORTHO05D001149 1.1e-17 94.0 149 40.3
Sed0024726 Sechium edule HOM05D000108 ORTHO05D001149 1.1e-17 94.0 142 41.5
Eucgr.K03170 Eucalyptus grandis HOM05D000108 ORTHO05D001149 1.4e-17 93.6 155 38.7
Lju41C55G1 Lonicera japonica HOM05D000108 ORTHO05D001149 1.6e-16 90.1 128 42.2
PGR004G0532 Punica granatum HOM05D000108 ORTHO05D001149 2.1e-16 89.7 159 35.2
PSO339G4855 Papaver somniferum HOM05D000108 ORTHO05D001149 2.7e-16 89.4 158 38.6
PSO648G0020 Papaver somniferum HOM05D000108 ORTHO05D001149 4.6e-16 88.6 158 37.3
SGA_v2.0_scaffold126G33836 Striga asiatica HOM05D000108 ORTHO05D001149 4.6e-16 88.6 147 40.1
Phvul.007G159100 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 6.1e-16 88.2 149 39.6
Oeu059991.1 Olea europaea HOM05D000108 ORTHO05D001149 7.9e-16 87.8 109 44.0
Glyma.13G133200 Glycine max HOM05D000108 ORTHO05D001149 1.3e-15 87.0 145 40.0
Sed0000666 Sechium edule HOM05D000108 ORTHO05D001149 1.3e-15 87.0 148 40.5
Glyma.10G045500 Glycine max HOM05D000108 ORTHO05D001149 1.8e-15 86.7 147 40.1
MSTRG.5691 Avicennia marina HOM05D000108 ORTHO05D001149 3.9e-15 85.5 153 35.9
CSS0011697 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 3.9e-15 85.5 152 36.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.9e-15 85.5 152 36.8
Nitab4.5_0000349g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.1e-14 84.0 146 36.3
GSVIVG01025610001 Vitis vinifera HOM05D000108 ORTHO05D001149 1.1e-14 84.0 155 36.8
DCAR_009257 Daucus carota HOM05D000108 ORTHO05D001149 1.5e-14 83.6 145 37.9
Prupe.6G249200 Prunus persica HOM05D000108 ORTHO05D001149 1.5e-14 83.6 146 39.0
TAR623G0060 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.5e-14 83.6 155 37.4
Sabra06G0062600 Salix brachista HOM05D000108 ORTHO05D001149 1.9e-14 83.2 159 36.5
Ca_09598_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 2.5e-14 82.8 149 37.6
Nitab4.5_0000527g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.5e-14 82.8 146 35.6
Rhsim05G0187400 Rhododendron simsii HOM05D000108 ORTHO05D001149 2.5e-14 82.8 148 39.9
Medtr1g067630 Medicago truncatula HOM05D000108 ORTHO05D001149 3.3e-14 82.4 148 37.2
vmacro20116 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 4.3e-14 82.0 148 35.1
PGSC0003DMG400019214 Solanum tuberosum HOM05D000108 ORTHO05D001149 1.3e-13 80.5 146 35.6
MD12G1136800 Malus domestica HOM05D000108 ORTHO05D001149 1.6e-13 80.1 146 37.7
RcHm_v2.0_Chr3g0467551 Rosa chinensis HOM05D000108 ORTHO05D001149 1.6e-13 80.1 145 38.6
FvH4_6g14420 Fragaria vesca HOM05D000108 ORTHO05D001149 2.2e-13 79.7 148 39.2
Lalb_Chr02g0153221 Lupinus albus HOM05D000108 ORTHO05D001149 2.2e-13 79.7 152 34.9
MD04G1119500 Malus domestica HOM05D000108 ORTHO05D001149 2.8e-13 79.3 147 38.1
CAN.G501.10 Capsicum annuum HOM05D000108 ORTHO05D001149 6.3e-13 78.2 146 34.9
FAN05G0640 Fragaria x ananassa HOM05D000108 ORTHO05D001149 6.3e-13 78.2 148 37.8
Sopen10g035720 Solanum pennellii HOM05D000108 ORTHO05D001149 6.3e-13 78.2 144 35.4
FAN09G1966 Fragaria x ananassa HOM05D000108 ORTHO05D001149 8.2e-13 77.8 148 38.5
Cc06_g03060 Coffea canephora HOM05D000108 ORTHO05D001149 1.1e-12 77.4 155 32.9
Solyc10g086340.1 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.1e-12 77.4 144 35.4
FAN02G2463 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.4e-12 77.0 144 38.2
HanXRQChr01g0026581 Helianthus annuus HOM05D000108 ORTHO05D001149 6.9e-12 74.7 157 38.2
Peaxi162Scf00407g00069 Petunia axillaris HOM05D000108 ORTHO05D001149 1.5e-11 73.6 147 32.0
arahy.Tifrunner.gnm1.ann1.V9SGYL Arachis hypogaea HOM05D000108 ORTHO05D001149 2.6e-11 72.8 154 33.8
COL.COLO4_14867 Corchorus olitorius HOM05D000108 ORTHO05D014103 2.6e-11 72.8 111 39.6
ECA248G3979 Erigeron canadensis HOM05D000108 ORTHO05D001149 4.5e-11 72.0 162 35.8
Nn2g10475 Nelumbo nucifera HOM05D000108 ORTHO05D001149 4.5e-11 72.0 155 31.6
Sc01g0003930 Simmondsia chinensis HOM05D000108 ORTHO05D001149 5.9e-11 71.6 136 38.2
BcaB06g26258 Brassica carinata HOM05D000108 ORTHO05D014103 7.7e-11 71.2 58 69.0
Lsat_1_v5_gn_1_55921 Lactuca sativa HOM05D000108 ORTHO05D001149 5.0e-10 68.6 156 33.3
Aqoxy2G02005 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 1.1e-09 67.4 157 33.1
ATR1152G079 Amborella trichopoda HOM05D000108 ORTHO05D001149 4.2e-09 65.5 150 30.7
arahy.Tifrunner.gnm1.ann1.V43IMF Arachis hypogaea HOM05D000108 ORTHO05D001149 1.2e-08 63.9 123 36.6
EL10Ac7g15934 Beta vulgaris HOM05D000108 ORTHO05D001149 8.8e-07 57.8 109 32.1
AUR62042976 Chenopodium quinoa HOM05D000108 ORTHO05D001149 2.0e-06 56.6 109 33.9
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 2.5e-06 56.2 153 24.2
TPR.G23077 Trifolium pratense HOM05D000108 ORTHO05D001149 4.3e-06 55.5 83 36.1
AUR62001858 Chenopodium quinoa HOM05D000108 ORTHO05D001149 7.4e-06 54.7 155 28.4
Aa31LG5G7600 Aethionema arabicum HOM05D000108 ORTHO05D001149 9.7e-06 54.3 154 25.3
ClCG04G008470 Citrullus lanatus HOM05D000108 ORTHO05D001149 9.7e-06 54.3 111 33.3
unitig_0.g1033 Utricularia gibba HOM05D000108 ORTHO05D001149 9.7e-06 54.3 113 30.1


User provided reference genes

Program Settings