Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-41 172.6 85 100.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-41 172.6 85 100.0
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 5.1e-41 170.6 84 100.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 2.6e-29 131.7 83 81.9
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 8.4e-28 126.7 83 79.5
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-27 125.9 85 78.8
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.9e-27 125.6 83 78.3
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.2e-27 124.8 83 75.9
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.7e-26 121.7 83 75.9
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 4.6e-26 120.9 82 75.6
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.0e-25 119.8 83 75.9
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.0e-25 119.8 83 75.9
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.8e-25 119.0 83 74.7
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 5.1e-25 117.5 83 74.7
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 6.7e-25 117.1 83 73.5
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.1e-24 116.3 83 73.5
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-24 116.3 82 74.4
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.9e-24 115.5 82 74.4
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.3e-24 114.8 83 73.5
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.8e-23 110.9 83 65.1
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.1e-22 109.8 83 68.7
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.1e-22 109.8 83 68.7
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 5.3e-22 107.5 83 67.5
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.2e-21 106.3 82 69.5
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.5e-21 105.9 108 53.7
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.0e-21 105.5 83 65.1
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 2.0e-21 105.5 83 65.1
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 2.6e-21 105.1 83 65.1
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 3.4e-21 104.8 83 66.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 5.8e-21 104.0 83 63.9
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.8e-21 104.0 90 63.3
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 5.8e-21 104.0 83 65.1
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.0e-20 103.2 83 65.1
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.3e-20 102.8 83 63.9
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.3e-20 102.8 83 63.9
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.3e-20 102.8 83 63.9
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.9e-20 101.7 83 62.7
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 3.8e-20 101.3 83 62.7
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 3.8e-20 101.3 83 62.7
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 3.8e-20 101.3 83 62.7
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 3.8e-20 101.3 92 58.7
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 3.8e-20 101.3 92 58.7
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 4.9e-20 100.9 82 64.6
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 4.9e-20 100.9 83 61.4
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 4.9e-20 100.9 83 61.4
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.9e-20 100.9 83 62.7
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 4.9e-20 100.9 83 65.1
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 6.5e-20 100.5 83 62.7
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 8.4e-20 100.1 83 60.2
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.1e-19 99.8 82 63.4
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.1e-19 99.8 82 63.4
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.9e-19 99.0 83 62.7
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.9e-19 99.0 83 60.2
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 2.5e-19 98.6 83 61.4
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.5e-19 98.6 83 61.4
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 3.2e-19 98.2 83 59.0
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 4.2e-19 97.8 82 62.2
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 4.2e-19 97.8 82 62.2
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 5.5e-19 97.4 83 60.2
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 5.5e-19 97.4 83 60.2
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 5.5e-19 97.4 82 63.4
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 7.1e-19 97.1 82 62.2
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 7.1e-19 97.1 81 60.5
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 7.1e-19 97.1 82 62.2
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 9.3e-19 96.7 82 62.2
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.6e-18 95.9 82 62.2
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.6e-18 95.9 82 62.2
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.6e-18 95.9 83 57.8
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 2.1e-18 95.5 82 62.2
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 2.7e-18 95.1 82 58.5
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.7e-18 95.1 82 62.2
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 2.7e-18 95.1 82 62.2
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.5e-18 94.7 81 59.3
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 4.6e-18 94.4 82 61.0
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 6.0e-18 94.0 82 61.0
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.3e-17 92.8 82 59.8
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.3e-17 92.8 93 57.0
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.3e-17 92.8 82 59.8
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.8e-17 92.4 83 59.0
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.8e-17 92.4 83 54.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.3e-17 92.0 82 61.0
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.3e-17 92.0 82 59.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.0e-17 91.7 82 59.8
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 3.0e-17 91.7 84 57.1
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.0e-17 91.7 100 49.0
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 5.1e-17 90.9 83 56.6
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.1e-17 90.9 82 58.5
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 5.1e-17 90.9 82 58.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 8.7e-17 90.1 82 58.5
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.1e-16 89.7 82 58.5
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.5e-16 88.6 54 83.3
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 5.7e-16 87.4 86 54.7
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 9.7e-16 86.7 82 56.1
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 9.7e-16 86.7 82 53.7
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.3e-15 86.3 82 54.9
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.3e-15 86.3 83 51.8
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.3e-15 86.3 82 53.7
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 1.6e-15 85.9 79 55.7
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 2.2e-15 85.5 79 55.7
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.8e-15 85.1 82 58.5
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 3.7e-15 84.7 45 91.1
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 4.8e-15 84.3 52 75.0
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 4.8e-15 84.3 81 55.6
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 6.3e-15 84.0 52 75.0
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.1e-14 83.2 82 52.4
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 2.4e-14 82.0 82 51.2
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 3.1e-14 81.6 52 71.2
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 9.0e-14 80.1 117 41.9
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.2e-13 79.7 82 48.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.5e-13 79.3 83 53.0
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.6e-13 78.6 81 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 3.4e-13 78.2 82 50.0
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 3.4e-13 78.2 83 44.6
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 4.5e-13 77.8 83 47.0
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.9e-12 75.1 82 53.7
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 8.5e-12 73.6 48 66.7
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-11 72.8 83 49.4
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-11 72.8 83 49.4
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.5e-11 72.0 80 52.5
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 9.4e-11 70.1 83 42.2
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 9.4e-11 70.1 80 51.2
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.2e-10 69.7 83 48.2
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 3.6e-10 68.2 85 50.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.6e-10 68.2 76 50.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.9e-08 62.4 45 64.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.3e-07 59.7 74 40.5
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 6.9e-06 53.9 82 42.7


User provided reference genes

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