Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.6e-159 565.5 317 100.0
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.2e-156 556.6 317 98.7
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-155 553.5 317 96.2
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.0e-154 549.3 317 95.0
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 6.8e-147 524.2 319 93.1
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 8.3e-145 517.3 317 92.4
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.2e-138 496.9 319 86.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 2.6e-130 469.2 310 87.4
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 8.3e-129 464.2 312 77.9
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 9.2e-128 460.7 317 83.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.0e-122 443.0 311 83.0
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.0e-122 443.0 311 83.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.6e-122 442.6 311 83.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.6e-122 442.6 311 83.9
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.7e-113 413.3 315 73.7
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.6e-111 405.2 315 76.8
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 4.9e-105 385.2 319 75.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.4e-104 381.7 315 74.9
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.0e-78 297.7 325 59.1
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.4e-67 260.8 300 60.0
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.9e-66 255.4 300 56.7
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 6.1e-63 245.4 306 55.9
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.3e-62 243.4 304 53.6
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-62 243.4 304 53.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.3e-62 243.4 304 53.6
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 5.1e-62 242.3 300 51.3
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.1e-61 241.1 301 52.2
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.2e-60 236.9 307 52.8
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.4e-59 233.4 299 49.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.1e-59 233.0 302 53.0
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 6.9e-51 205.3 295 49.5
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 2.9e-49 199.9 303 49.2
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 2.0e-45 187.2 337 43.3
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 2.6e-45 186.8 335 40.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.7e-44 183.0 335 43.3
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 8.2e-44 181.8 338 45.0
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.4e-43 180.3 332 41.9
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 5.3e-43 179.1 353 43.1
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 7.0e-43 178.7 340 39.4
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.6e-42 176.8 330 40.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.0e-41 174.9 341 40.8
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.7e-41 174.1 334 41.9
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.2e-41 173.7 330 39.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.9e-41 173.3 333 42.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.2e-37 161.4 329 35.6
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 7.5e-37 158.7 318 40.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.8e-36 156.8 325 39.4
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 6.3e-36 155.6 315 36.2
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.8e-35 154.1 319 39.8
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 4.1e-35 152.9 337 34.7
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.1e-35 151.8 335 40.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.2e-34 151.4 322 37.3
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.7e-34 150.2 334 39.8
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 7.7e-34 148.7 329 41.0
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.5e-32 144.4 313 35.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.5e-32 144.4 335 37.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.5e-32 144.4 335 37.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.9e-32 144.1 332 40.1
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.5e-32 143.7 322 32.9
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.6e-31 141.0 335 31.6
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.7e-31 139.4 335 37.6
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.7e-31 139.4 333 32.4
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.4e-30 137.9 318 36.2
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.8e-30 137.5 348 36.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-30 137.5 335 37.0
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.8e-30 137.5 330 39.1
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 4.0e-30 136.3 319 32.6
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 6.8e-30 135.6 345 39.1
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 6.8e-30 135.6 318 32.4
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.2e-29 134.8 318 38.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 5.7e-29 132.5 342 34.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 9.8e-29 131.7 319 35.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 9.8e-29 131.7 309 34.3
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.7e-28 129.8 328 32.0
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.7e-28 129.8 328 30.8
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 3.7e-28 129.8 324 32.4
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 4.8e-28 129.4 329 37.1
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 8.3e-28 128.6 336 38.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.3e-28 128.6 332 30.7
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.4e-27 127.9 327 34.9
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.8e-27 127.5 328 30.2
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.8e-27 127.5 324 42.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.8e-27 127.5 316 31.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.4e-27 127.1 340 39.1
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.1e-27 126.3 344 31.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.1e-27 126.3 340 39.1
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.1e-27 126.3 316 31.0
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 7.0e-27 125.6 338 32.5
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.1e-27 125.2 340 38.8
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 9.1e-27 125.2 305 37.7
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.6e-26 124.4 328 32.3
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.6e-26 124.4 328 40.9
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.5e-26 123.2 326 42.3
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.5e-26 122.9 340 34.7
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.5e-26 122.9 343 39.7
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 5.9e-26 122.5 310 41.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.9e-26 122.5 339 39.8
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.3e-25 121.3 320 37.5
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.9e-25 120.2 330 41.5
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.8e-25 119.8 339 36.9
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.1e-24 118.2 320 40.6
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.1e-24 118.2 322 39.4
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.5e-24 117.9 327 41.9
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 5.5e-24 115.9 313 35.1
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 5.5e-24 115.9 326 29.4
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.6e-23 114.4 309 33.3
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 2.8e-23 113.6 324 39.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.4e-22 111.3 314 29.0
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 6.8e-22 109.0 191 40.8
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.8e-22 109.0 285 35.1
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.5e-21 107.8 315 33.0
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.0e-21 107.5 315 33.0
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 3.1e-19 100.1 327 27.2
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.2e-19 98.6 294 28.6
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.6e-18 97.8 318 27.7
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.5e-18 96.7 319 28.2
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 4.5e-18 96.3 187 40.6
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.3e-17 94.0 287 30.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.8e-17 93.2 210 33.8
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 6.6e-17 92.4 313 31.3
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.5e-16 91.3 195 36.4
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.5e-16 91.3 322 30.1
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.5e-16 90.5 323 31.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.5e-16 90.5 318 25.8
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.3e-16 90.1 325 30.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 3.3e-16 90.1 315 26.3
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 4.3e-16 89.7 318 30.8
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 9.5e-16 88.6 313 34.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 4.7e-15 86.3 302 35.8
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.8e-14 84.3 318 34.6
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 4.9e-12 76.3 304 28.6
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 8.3e-12 75.5 267 31.1
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.2e-11 73.6 328 35.7
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 3.2e-11 73.6 270 37.4
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 9.2e-11 72.0 319 26.6
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.6e-10 71.2 78 44.9
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.5e-10 70.1 172 33.7
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 6.6e-09 65.9 69 44.9
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.5e-08 63.9 311 32.8
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.3e-08 63.5 283 29.0
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 3.3e-08 63.5 322 26.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.3e-08 63.5 172 30.2
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.3e-08 62.4 86 40.7
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.1e-07 60.8 164 30.5
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 6.2e-07 59.3 252 34.9
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 8.0e-07 58.9 178 28.1
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.8e-06 55.8 163 28.8


User provided reference genes

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