Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p23320 Brassica napus HOM05D002205 ORTHO05D018573 1.0e-148 530.0 260 100.0
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 1.9e-91 339.7 197 86.3
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 5.3e-81 305.1 216 73.1
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 1.5e-59 233.8 159 74.8
BcaC07g39606 Brassica carinata HOM05D002205 ORTHO05D018573 9.7e-59 231.1 122 90.2
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 2.1e-53 213.4 109 90.8
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 2.5e-38 163.3 170 56.5
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 2.5e-38 163.3 170 56.5
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 2.5e-38 163.3 170 56.5
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 6.1e-37 158.7 163 57.1
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 1.4e-36 157.5 168 55.4
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 2.3e-36 156.8 170 55.3
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 4.0e-36 156.0 169 53.8
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 4.0e-36 156.0 168 55.4
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 6.8e-36 155.2 168 56.0
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 1.5e-35 154.1 169 53.8
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 2.0e-35 153.7 168 55.4
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 3.4e-35 152.9 168 54.8
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 3.4e-35 152.9 168 55.4
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 5.7e-35 152.1 168 54.8
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 5.7e-35 152.1 168 54.8
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 5.7e-35 152.1 168 55.4
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 7.5e-35 151.8 168 53.6
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 1.7e-34 150.6 168 54.8
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 2.2e-34 150.2 168 54.2
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 1.4e-33 147.5 167 51.5
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 1.4e-33 147.5 168 50.6
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.8e-33 147.1 167 50.9
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 2.4e-33 146.7 165 50.9
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 7.0e-33 145.2 167 49.7
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 9.1e-33 144.8 167 49.7
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 1.2e-32 144.4 167 49.7
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 2.0e-32 143.7 167 49.7
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 2.0e-32 143.7 163 52.8
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 2.0e-32 143.7 167 49.1
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 3.5e-32 142.9 165 51.5
COL.COLO4_31010 Corchorus olitorius HOM05D002205 ORTHO05D004847 3.5e-32 142.9 165 50.3
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 3.5e-32 142.9 179 48.0
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 3.5e-32 142.9 168 49.4
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 5.9e-32 142.1 174 51.1
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 5.9e-32 142.1 167 49.7
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 5.9e-32 142.1 168 48.8
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 5.9e-32 142.1 167 47.9
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 7.7e-32 141.7 167 50.9
TWI09G0418 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 7.7e-32 141.7 168 49.4
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 1.0e-31 141.4 179 48.0
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 2.3e-31 140.2 164 49.4
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 2.3e-31 140.2 164 50.6
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 2.3e-31 140.2 164 50.6
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 2.3e-31 140.2 168 48.8
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 2.9e-31 139.8 164 48.2
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 2.9e-31 139.8 165 50.3
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 2.9e-31 139.8 167 48.5
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 3.8e-31 139.4 175 47.4
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 5.0e-31 139.0 175 48.0
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 6.5e-31 138.7 164 50.6
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 6.5e-31 138.7 163 49.7
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 6.5e-31 138.7 161 50.9
Gohir.A06G139900 Gossypium hirsutum HOM05D002205 ORTHO05D004847 8.6e-31 138.3 164 50.0
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 8.6e-31 138.3 165 48.5
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 1.1e-30 137.9 167 47.9
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.1e-30 137.9 185 45.4
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 1.1e-30 137.9 179 47.5
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 1.5e-30 137.5 170 47.1
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 4.2e-30 136.0 173 46.2
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 4.2e-30 136.0 165 47.3
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 4.2e-30 136.0 165 47.3
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 4.2e-30 136.0 164 47.0
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 5.5e-30 135.6 167 46.7
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 5.5e-30 135.6 167 46.7
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 5.5e-30 135.6 165 47.9
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 5.5e-30 135.6 176 46.6
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 7.2e-30 135.2 167 47.9
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 7.2e-30 135.2 163 48.5
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 9.5e-30 134.8 171 45.6
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 9.5e-30 134.8 172 45.3
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 9.5e-30 134.8 167 47.3
Hund17750 Selenicereus undatus HOM05D002205 ORTHO05D004847 1.2e-29 134.4 168 50.6
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 1.6e-29 134.0 161 49.7
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 1.6e-29 134.0 163 47.2
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 1.6e-29 134.0 165 47.9
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 2.1e-29 133.7 167 47.3
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 2.1e-29 133.7 170 45.3
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 2.8e-29 133.3 164 45.7
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 2.8e-29 133.3 64 92.2
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 2.8e-29 133.3 64 92.2
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 2.8e-29 133.3 169 45.0
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 3.6e-29 132.9 175 45.7
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 3.6e-29 132.9 171 45.0
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 3.6e-29 132.9 168 47.0
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 3.6e-29 132.9 165 52.1
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 4.7e-29 132.5 169 45.0
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 4.7e-29 132.5 175 45.7
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 6.1e-29 132.1 168 47.0
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 8.0e-29 131.7 171 46.2
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 1.0e-28 131.3 170 45.3
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 1.0e-28 131.3 170 45.3
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 1.0e-28 131.3 168 47.6
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 1.4e-28 131.0 171 44.4
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 1.4e-28 131.0 149 49.0
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 1.4e-28 131.0 167 44.3
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 1.4e-28 131.0 166 49.4
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 1.8e-28 130.6 171 44.4
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 1.8e-28 130.6 166 45.2
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 2.3e-28 130.2 166 44.0
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 4.0e-28 129.4 163 47.2
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 5.2e-28 129.0 169 44.4
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 8.9e-28 128.3 168 47.0
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 8.9e-28 128.3 169 45.6
Migut.K01167 Erythranthe guttata HOM05D002205 ORTHO05D004847 8.9e-28 128.3 165 48.5
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 8.9e-28 128.3 164 43.3
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 8.9e-28 128.3 164 44.5
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 1.2e-27 127.9 164 47.0
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 1.2e-27 127.9 169 43.2
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 1.5e-27 127.5 166 48.8
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 1.5e-27 127.5 162 44.4
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 2.0e-27 127.1 169 43.8
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 2.0e-27 127.1 171 43.9
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 2.0e-27 127.1 173 47.4
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 2.6e-27 126.7 168 46.4
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 2.6e-27 126.7 165 48.5
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 2.6e-27 126.7 165 48.5
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 2.6e-27 126.7 165 48.5
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea HOM05D002205 ORTHO05D004847 3.4e-27 126.3 174 43.1
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 3.4e-27 126.3 169 43.2
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 3.4e-27 126.3 169 43.2
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 4.4e-27 125.9 161 49.7
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 4.4e-27 125.9 168 45.2
HPP92_018655 Vanilla planifolia HOM05D002205 ORTHO05D004847 5.7e-27 125.6 162 46.3
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 9.8e-27 124.8 165 47.9
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 1.3e-26 124.4 157 47.1
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 1.7e-26 124.0 161 47.8
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 1.7e-26 124.0 173 44.5
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 1.7e-26 124.0 233 37.3
Atru.chr10.1082 Acer truncatum HOM05D002205 ORTHO05D004847 2.8e-26 123.2 103 57.3
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 4.9e-26 122.5 197 42.1
Eucgr.D00270 Eucalyptus grandis HOM05D002205 ORTHO05D004847 6.3e-26 122.1 175 48.0
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 1.1e-25 121.3 168 43.5
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 1.4e-25 120.9 168 43.5
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 3.1e-25 119.8 161 45.3
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 5.4e-25 119.0 153 49.0
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 7.0e-25 118.6 178 42.7
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 1.2e-24 117.9 108 58.3
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 2.0e-24 117.1 104 57.7
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 3.5e-24 116.3 171 42.7
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 3.5e-24 116.3 165 44.2
VMungo0251G1393 Vigna mungo HOM05D002205 ORTHO05D004847 1.0e-23 114.8 169 42.0
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 1.3e-23 114.4 108 57.4
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 3.8e-23 112.8 177 40.7
AUR62002680 Chenopodium quinoa HOM05D002205 ORTHO05D004847 1.1e-22 111.3 146 47.3
FvH4_3g05040 Fragaria vesca HOM05D002205 ORTHO05D004847 3.3e-22 109.8 118 52.5
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 3.6e-21 106.3 222 35.1
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 4.7e-21 105.9 128 49.2
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea HOM05D002205 ORTHO05D004847 8.0e-21 105.1 148 40.5
Pp3c3_9110 Physcomitrium patens HOM05D002205 ORTHO05D004847 8.0e-21 105.1 166 40.4
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 1.0e-20 104.8 235 33.2
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 2.3e-20 103.6 128 48.4
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 1.7e-18 97.4 70 67.1
Glyma.08G231600 Glycine max HOM05D002205 ORTHO05D004847 1.2e-16 91.3 134 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1912 Anthoceros agrestis HOM05D002205 ORTHO05D004847 4.6e-16 89.4 182 36.8
Glyma.08G099700 Glycine max HOM05D002205 ORTHO05D004847 1.0e-15 88.2 131 43.5
Gorai.007G245400 Gossypium raimondii HOM05D002205 ORTHO05D004847 1.7e-15 87.4 55 74.5
Os03g0642900 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 3.0e-15 86.7 142 39.4
Zm00001eb083760 Zea mays HOM05D002205 ORTHO05D004847 1.1e-14 84.7 144 40.3
Zm00001eb050530 Zea mays HOM05D002205 ORTHO05D004847 6.2e-13 79.0 119 47.1
C04p36940 Brassica napus HOM05D002205 ORTHO05D101377 8.0e-13 78.6 39 89.7
SHI10514 Sapria himalayana HOM05D002205 ORTHO05D004847 4.0e-12 76.3 97 48.5
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 7.5e-11 72.0 293 26.6
Os12g0615500 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 2.9e-10 70.1 99 43.4
PRCOL_00004844 Prasinoderma coloniale HOM05D002205 ORTHO05D004847 4.9e-10 69.3 155 32.9
Gohir.D11G230780 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.9e-09 67.4 102 39.2
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 3.2e-09 66.6 38 78.9
BolC6t37247H Brassica oleracea HOM05D003212 ORTHO05D017586 6.0e-08 62.4 102 41.2


User provided reference genes

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