Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 0.0e+00 1239.2 622 100.0
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 0.0e+00 1229.5 622 99.0
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 0.0e+00 1222.6 622 98.6
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 0.0e+00 1211.4 622 96.9
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 0.0e+00 1205.7 622 96.6
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 0.0e+00 1154.0 622 92.0
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 0.0e+00 1120.5 622 88.1
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 0.0e+00 1091.6 623 86.0
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 0.0e+00 1084.3 623 86.5
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 0.0e+00 1075.8 623 85.9
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.3e-311 1072.4 623 85.6
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.6e-309 1065.4 623 84.9
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.8e-265 919.1 687 70.3
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.7e-258 894.8 625 72.0
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.5e-238 829.7 619 65.4
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.3e-231 805.8 619 63.7
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 5.6e-230 801.2 621 63.6
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 2.8e-229 798.9 622 63.2
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.6e-227 792.3 626 64.1
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 1.3e-226 790.0 622 62.2
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 2.2e-226 789.3 621 63.0
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.3e-222 775.4 619 62.4
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.6e-221 773.1 624 61.5
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 6.9e-220 767.7 623 62.3
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 6.9e-220 767.7 624 61.1
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.7e-218 763.1 623 61.2
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 6.4e-218 761.1 623 61.3
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 6.7e-215 751.1 621 61.7
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-214 750.0 621 61.4
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 3.3e-214 748.8 626 62.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.1e-213 746.1 621 61.2
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.1e-212 743.8 626 60.1
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.4e-212 743.4 601 61.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 5.8e-211 738.0 628 60.5
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 8.4e-210 734.2 628 59.2
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 8.4e-210 734.2 623 60.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.1e-209 733.8 626 60.5
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 4.2e-209 731.9 628 60.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 2.7e-208 729.2 626 60.5
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 3.0e-207 725.7 624 59.3
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 3.9e-207 725.3 632 59.7
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 8.7e-207 724.2 620 57.6
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.1e-206 723.8 624 59.1
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.5e-206 722.6 623 59.2
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 2.4e-204 716.1 626 57.2
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.0e-203 713.0 625 58.7
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 4.5e-203 711.8 623 57.3
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.3e-202 710.3 624 59.1
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 5.0e-202 708.4 626 58.9
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 8.5e-202 707.6 657 55.7
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.1e-201 707.2 626 58.8
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.9e-201 706.4 625 56.2
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 2.5e-201 706.1 625 58.1
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-200 703.4 621 57.5
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.7e-200 702.6 625 56.2
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 4.6e-200 701.8 631 57.5
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 6.1e-200 701.4 626 57.5
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 7.9e-200 701.0 621 57.2
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 3.0e-199 699.1 623 57.5
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 8.7e-199 697.6 634 56.3
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.5e-198 696.8 624 56.6
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 4.3e-198 695.3 621 56.8
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 5.7e-198 694.9 621 57.5
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 6.3e-197 691.4 624 56.1
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.4e-196 690.3 623 57.0
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 5.9e-195 684.9 633 57.2
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 5.9e-195 684.9 628 57.5
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 7.7e-195 684.5 624 58.3
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.5e-194 681.4 623 56.8
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.1e-193 680.6 690 52.8
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 9.4e-193 677.6 632 55.7
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 3.6e-192 675.6 623 55.2
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.1e-192 674.9 619 54.6
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-191 673.3 638 54.4
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 3.0e-191 672.5 570 61.6
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 8.8e-191 671.0 617 57.4
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 9.7e-190 667.5 621 55.6
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 8.2e-189 664.5 621 54.6
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 5.3e-188 661.8 620 54.5
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.5e-187 660.2 621 54.6
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.5e-187 660.2 620 55.5
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.2e-184 650.6 621 54.3
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.0e-183 646.0 622 53.5
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 2.6e-182 642.9 529 60.3
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.4e-182 642.1 621 53.1
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 7.4e-182 641.3 618 53.2
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.3e-181 640.6 621 53.0
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 8.2e-181 637.9 588 56.1
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.1e-180 636.0 663 51.3
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.2e-179 634.0 655 53.3
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.5e-179 632.1 634 51.9
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 5.9e-179 631.7 623 53.0
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-176 623.6 622 52.1
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 2.7e-171 606.3 527 58.8
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.5e-170 601.3 624 51.8
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.1e-168 596.7 622 50.0
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.0e-159 566.2 640 47.5
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.0e-159 566.2 640 47.5
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.8e-159 565.1 637 47.7
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.5e-155 552.7 619 48.5
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.3e-149 534.3 626 46.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.0e-146 523.1 615 46.3
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 3.9e-146 522.7 621 48.0
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 3.9e-146 522.7 610 46.9
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 9.8e-142 508.1 491 56.0
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.4e-140 504.2 630 45.1
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 3.3e-137 493.0 626 43.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 8.1e-136 488.4 655 42.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.0e-130 471.5 531 48.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.9e-125 452.6 409 55.0
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.6e-121 439.1 385 55.8
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.2e-117 427.2 580 41.2
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.3e-113 412.9 406 54.7
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.7e-107 393.7 409 51.3
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 4.3e-105 386.3 473 43.8
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 6.3e-80 302.8 763 29.2
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.9e-70 269.6 164 82.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.2e-69 267.7 632 31.8
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.0e-65 254.6 670 31.6
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.1e-55 220.7 244 46.3
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.2e-51 208.8 393 33.8
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 4.7e-51 206.8 271 43.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 5.7e-49 199.9 214 49.1
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.8e-48 197.6 130 69.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 1.8e-47 194.9 110 86.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 7.0e-39 166.4 640 25.8
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.8e-35 154.5 125 60.8
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 9.2e-31 139.4 131 51.1
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.5e-28 131.3 98 67.3
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.1e-27 128.3 93 65.6
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.4e-26 125.6 111 53.2
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 5.2e-26 123.6 164 42.7
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.4e-23 115.5 124 52.4
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.7e-22 111.3 175 42.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.6e-19 102.1 154 38.3
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 7.5e-17 93.2 124 42.7
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 8.3e-16 89.7 73 56.2
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 6.0e-14 83.6 82 54.9
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 1.0e-13 82.8 68 57.4
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 5.1e-13 80.5 139 36.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 6.6e-13 80.1 71 54.9
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 3.3e-12 77.8 84 48.8
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.1e-11 75.1 233 26.6
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.8e-11 74.7 37 89.2
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 5.2e-10 70.5 54 59.3
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 2.0e-09 68.6 52 61.5
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 3.2e-07 61.2 48 62.5
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 7.1e-07 60.1 56 51.8
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 9.2e-07 59.7 43 62.8
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 2.1e-06 58.5 86 41.9


User provided reference genes

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