Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.8e-265 918.7 455 100.0
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 9.7e-264 912.9 455 99.1
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 1.5e-261 905.6 475 95.6
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 5.0e-260 900.6 484 93.6
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.0e-252 876.3 455 94.1
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 3.0e-249 864.8 455 93.6
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 6.3e-247 857.1 455 92.5
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 4.2e-243 844.3 474 88.4
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.0e-240 835.5 466 88.8
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.3e-239 832.8 455 89.7
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 4.1e-238 827.8 412 99.8
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 4.5e-237 824.3 455 89.0
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.1e-235 819.7 455 89.0
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 2.3e-233 812.0 455 87.5
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.0e-225 786.6 448 85.7
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.1e-219 766.5 451 83.6
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 5.4e-206 721.1 452 75.9
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.3e-204 716.5 448 75.2
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.5e-203 713.0 462 77.3
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 4.4e-200 701.4 452 73.5
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 2.2e-199 699.1 453 73.1
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 6.4e-199 697.6 452 73.0
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 3.2e-198 695.3 449 73.5
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.1e-198 694.9 448 73.9
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 4.1e-198 694.9 452 71.9
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 5.4e-198 694.5 448 73.4
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 5.4e-198 694.5 453 73.7
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 7.1e-198 694.1 448 73.7
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 9.2e-198 693.7 447 74.3
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.2e-197 693.3 448 73.7
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.6e-197 693.0 448 73.0
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.6e-197 693.0 452 72.1
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.6e-197 693.0 452 73.2
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 4.6e-197 691.4 448 73.9
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 6.0e-197 691.0 448 72.5
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.3e-196 689.9 449 73.7
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.3e-196 689.1 448 73.4
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 3.0e-196 688.7 455 72.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 3.9e-196 688.3 477 71.3
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.9e-196 688.3 456 73.0
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 5.1e-196 688.0 449 72.8
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 8.6e-196 687.2 455 71.4
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.5e-195 686.4 448 73.2
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.5e-195 685.6 451 72.5
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 5.6e-195 684.5 448 73.2
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.2e-194 683.3 449 72.6
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.6e-194 681.8 452 72.1
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 4.7e-194 681.4 451 72.1
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 4.7e-194 681.4 451 72.1
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 4.7e-194 681.4 451 72.3
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.1e-193 680.2 448 71.4
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.1e-193 680.2 448 73.2
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.1e-193 680.2 474 68.4
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.1e-193 680.2 459 71.5
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 2.4e-193 679.1 452 70.6
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 5.2e-193 677.9 448 72.3
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.5e-192 676.4 437 73.9
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.5e-192 676.4 448 72.3
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.5e-192 676.4 449 71.7
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.5e-192 676.4 448 71.7
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.0e-192 676.0 449 71.5
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.6e-192 675.6 444 71.2
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 1.7e-191 672.9 453 71.5
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.2e-191 672.5 413 76.5
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 4.9e-191 671.4 448 70.5
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.9e-191 671.4 449 70.2
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 4.9e-191 671.4 454 70.3
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 8.4e-191 670.6 479 67.6
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.9e-190 669.5 448 69.6
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 1.9e-190 669.5 431 72.6
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.2e-190 668.7 460 70.0
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 5.4e-190 667.9 448 72.1
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 2.7e-189 665.6 449 70.4
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.5e-189 665.2 455 70.1
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 3.9e-188 661.8 450 71.3
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 3.9e-188 661.8 448 71.7
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 4.3e-187 658.3 448 69.6
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 5.6e-187 657.9 443 70.9
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 5.6e-187 657.9 448 70.1
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 4.8e-186 654.8 448 69.0
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 8.1e-186 654.1 450 70.7
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.8e-185 652.9 453 69.3
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 2.4e-185 652.5 449 67.9
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 9.9e-184 647.1 448 68.5
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 2.2e-183 646.0 466 66.1
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 2.9e-183 645.6 431 71.7
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 3.5e-181 638.6 458 66.4
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 5.1e-180 634.8 454 76.2
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 3.7e-178 628.6 432 67.1
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 4.8e-178 628.2 452 67.9
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 2.6e-176 622.5 501 63.7
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 4.5e-176 621.7 481 64.2
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 6.4e-175 617.8 463 66.5
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 7.9e-173 610.9 448 65.8
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 8.7e-172 607.4 452 66.8
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.9e-171 606.3 483 61.1
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 3.3e-171 605.5 407 71.7
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 5.6e-171 604.7 406 70.0
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 8.4e-167 590.9 409 69.4
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.1e-166 590.5 385 71.7
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 2.3e-164 582.8 380 73.9
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 3.1e-161 572.4 448 63.4
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.0e-160 569.7 448 63.4
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 7.6e-160 567.8 461 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 1.3e-159 567.0 452 60.4
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 3.9e-156 555.4 427 61.4
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 2.9e-151 539.3 436 58.7
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 9.4e-150 534.3 427 60.0
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 2.8e-146 522.7 434 55.8
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 4.1e-145 518.8 322 76.4
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 3.8e-127 459.1 273 78.4
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.4e-113 413.3 448 51.1
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 1.6e-112 410.6 434 45.9
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 1.7e-111 407.1 438 48.4
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 7.8e-96 355.1 315 58.4
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 2.6e-91 340.1 370 50.8
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.1e-86 324.7 484 37.8
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.8e-85 320.1 181 82.3
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.1e-54 218.4 188 59.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 6.2e-53 212.6 377 39.3
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 1.4e-52 211.5 348 37.6
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 3.1e-52 210.3 108 85.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 9.7e-38 162.2 137 62.8
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.4e-36 157.5 124 61.3
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 6.9e-36 156.0 124 64.5
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 9.1e-36 155.6 386 31.9
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 2.1e-32 144.4 69 97.1
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 4.1e-28 130.2 83 65.1
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 3.5e-27 127.1 129 48.8
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 1.1e-25 122.1 102 57.8
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.7e-21 108.2 83 62.7
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 2.0e-19 101.3 207 29.0
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 2.9e-18 97.4 75 58.7
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 3.8e-18 97.1 67 68.7
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-17 94.0 104 47.1
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 1.2e-16 92.0 62 64.5
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 4.1e-12 77.0 100 47.0
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 1.2e-11 75.5 63 60.3


User provided reference genes

Program Settings