Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.3e-129 466.5 248 100.0
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 2.2e-129 465.7 248 99.6
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.9e-120 436.0 233 99.1
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.1e-117 426.8 233 97.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.1e-117 426.8 233 97.9
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.3e-109 398.7 239 90.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 7.2e-104 380.9 243 86.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.9e-96 356.3 227 85.9
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 6.1e-87 324.7 230 79.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 9.8e-85 317.4 236 78.4
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 8.3e-84 314.3 219 79.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.7e-82 309.3 209 80.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 7.3e-80 301.2 233 70.4
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.4e-75 286.2 227 66.1
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.8e-70 270.0 190 70.0
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.4e-69 265.8 183 74.3
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 5.8e-69 265.0 240 62.5
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.7e-68 263.5 186 69.9
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.2e-68 263.1 183 73.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.7e-68 262.3 246 60.6
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 8.3e-68 261.2 180 72.8
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.1e-67 260.8 216 65.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.2e-67 259.2 230 59.6
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.2e-67 259.2 183 70.5
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.2e-67 259.2 187 69.5
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 4.1e-67 258.8 216 63.4
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 5.4e-67 258.5 182 70.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-66 257.3 188 69.1
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.7e-66 256.1 197 67.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 3.5e-66 255.8 238 59.2
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 3.5e-66 255.8 244 62.3
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 6.0e-66 255.0 186 69.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.0e-65 254.2 222 60.4
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.7e-65 253.4 180 69.4
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.7e-65 253.4 236 59.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.7e-65 253.4 213 64.3
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.3e-65 253.1 181 68.5
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.3e-65 253.1 181 68.5
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.3e-65 253.1 181 69.1
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 3.9e-65 252.3 193 64.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 3.9e-65 252.3 186 66.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 6.6e-65 251.5 181 69.1
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 8.6e-65 251.1 198 68.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.1e-64 250.8 237 58.2
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-64 250.8 192 66.7
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.5e-64 250.4 199 64.3
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.5e-64 250.4 183 67.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-64 250.4 178 69.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.5e-64 250.4 180 70.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.9e-64 250.0 237 58.2
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.9e-64 250.0 187 70.1
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.3e-64 249.2 185 67.6
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.3e-64 248.8 187 66.3
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 7.3e-64 248.1 180 70.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 9.5e-64 247.7 239 59.0
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 9.5e-64 247.7 189 66.1
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 9.5e-64 247.7 186 65.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.2e-63 247.3 183 66.1
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-63 247.3 241 57.3
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.6e-63 246.9 197 63.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.1e-63 246.5 196 67.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.8e-63 246.1 236 58.1
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.8e-63 246.1 234 59.0
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.8e-63 246.1 224 59.4
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 4.7e-63 245.4 225 60.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 6.2e-63 245.0 187 65.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.1e-63 244.6 210 60.5
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 8.1e-63 244.6 184 70.1
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.1e-62 244.2 224 56.2
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.4e-62 243.8 181 66.3
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.4e-62 243.8 195 64.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.4e-62 243.8 184 65.2
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.4e-62 243.8 217 61.8
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 176 69.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.4e-62 243.8 176 68.8
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.4e-62 243.8 232 56.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 3.1e-62 242.7 231 56.7
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.2e-62 241.9 182 67.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 5.2e-62 241.9 176 69.3
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 6.8e-62 241.5 180 66.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 6.8e-62 241.5 156 74.4
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.2e-61 240.7 215 60.0
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.2e-61 240.7 223 57.0
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.6e-61 239.6 189 63.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 5.8e-61 238.4 147 79.6
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.6e-61 238.0 216 59.3
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.3e-60 237.3 180 65.6
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-60 236.9 186 65.6
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.7e-60 236.9 179 67.6
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.9e-60 236.1 157 73.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.9e-59 233.4 175 66.3
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.4e-59 233.0 186 63.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.2e-58 230.7 146 76.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.1e-58 229.9 155 74.8
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.7e-58 229.6 185 61.1
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.5e-58 229.2 146 76.7
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.6e-58 228.8 215 58.1
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.6e-58 228.8 226 54.9
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 4.6e-58 228.8 188 63.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 7.8e-58 228.0 186 61.8
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-57 227.3 185 63.2
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.3e-57 227.3 178 63.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.7e-57 226.9 148 73.0
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.9e-57 225.7 165 71.5
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 6.6e-57 224.9 147 75.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 8.7e-57 224.6 222 57.2
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.5e-56 223.8 140 77.1
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-56 223.8 147 74.1
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.3e-56 222.6 147 74.8
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.6e-56 221.1 146 72.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.1e-55 219.9 151 71.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.8e-55 219.5 173 65.9
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 3.6e-55 219.2 144 73.6
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.3e-54 215.3 176 60.8
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.3e-54 215.3 176 60.8
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.4e-53 212.6 176 60.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.1e-51 207.6 219 54.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-51 207.2 206 54.9
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.9e-51 206.8 175 59.4
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.4e-51 205.3 221 52.0
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.7e-50 203.0 121 79.3
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.5e-48 197.2 188 58.5
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.3e-48 196.1 155 64.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.1e-46 191.0 178 54.5
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.9e-46 188.3 141 70.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 8.4e-44 181.4 142 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.4e-43 179.9 196 50.0
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.4e-43 179.9 179 53.1
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.2e-43 179.1 176 50.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.8e-41 173.7 191 52.4
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.8e-41 173.7 140 64.3
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.3e-41 173.3 165 58.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 8.7e-41 171.4 166 57.2
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.9e-40 170.2 227 47.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.5e-40 169.9 141 66.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.8e-39 166.4 164 53.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.2e-34 151.0 149 56.4
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 6.0e-34 148.7 111 67.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-33 147.5 216 43.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 8.7e-33 144.8 193 45.1
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.5e-32 143.3 208 45.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.4e-28 128.3 123 56.1
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.6e-26 124.0 160 48.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.3e-24 115.9 156 44.9
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.2e-21 107.8 79 67.1
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-18 97.8 141 36.9
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 8.8e-17 91.7 163 33.7
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 9.7e-16 88.2 131 35.1
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.3e-12 77.8 142 35.9
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.1e-11 74.7 152 28.9
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.2e-10 71.2 83 48.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.1e-10 68.9 120 31.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-08 64.7 127 30.7
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.3e-08 63.2 160 29.4
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-06 57.4 69 43.5
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.0e-06 55.5 79 46.8


User provided reference genes

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