Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 1.1e-104 383.3 191 100.0
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.5e-104 382.1 191 99.5
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.5e-104 382.1 191 99.5
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.8e-102 375.9 191 97.4
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 3.7e-100 368.2 191 94.8
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 3.7e-100 368.2 191 94.8
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.9e-100 367.9 191 94.8
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 4.9e-100 367.9 191 94.8
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 4.1e-99 364.8 191 94.2
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 2.7e-98 362.1 191 93.2
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 1.3e-97 359.8 191 91.6
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 3.0e-97 358.6 191 92.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 8.6e-97 357.1 191 93.7
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.9e-96 355.9 191 90.6
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 2.5e-96 355.5 191 91.6
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.2e-95 353.2 191 90.6
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 1.8e-94 349.4 192 89.6
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 2.4e-91 339.0 192 86.5
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 7.1e-91 337.4 191 85.9
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 9.2e-91 337.0 191 85.9
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 3.5e-90 335.1 191 85.9
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 1.3e-89 333.2 188 85.1
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.3e-89 332.4 192 85.4
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 6.6e-89 330.9 191 85.9
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 8.6e-89 330.5 191 83.8
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.1e-88 330.1 191 83.2
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.5e-88 329.7 191 84.3
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 84.3
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 85.3
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.2
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.2
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 4.3e-88 328.2 191 83.8
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 4.3e-88 328.2 191 85.3
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 7.3e-88 327.4 191 84.3
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 9.5e-88 327.0 190 84.2
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 9.5e-88 327.0 191 84.3
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 85.3
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 85.3
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 1.2e-87 326.6 190 83.7
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.2e-87 326.6 192 84.4
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.1e-87 325.9 191 82.2
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 2.8e-87 325.5 191 81.7
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 2.8e-87 325.5 192 83.9
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 2.8e-87 325.5 191 83.8
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 84.8
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 6.2e-87 324.3 191 82.2
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 6.2e-87 324.3 191 83.2
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 6.2e-87 324.3 192 83.3
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 8.1e-87 323.9 191 83.2
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.1e-86 323.6 193 83.4
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.1e-86 323.6 191 82.7
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 1.4e-86 323.2 190 82.1
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 2.3e-86 322.4 192 81.8
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 82.7
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 83.8
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 84.3
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 191 83.8
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 3.1e-86 322.0 189 82.0
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 3.1e-86 322.0 192 84.4
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 3.1e-86 322.0 191 83.2
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 5.2e-86 321.2 191 80.6
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 6.8e-86 320.9 194 81.4
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 6.8e-86 320.9 187 85.0
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 6.8e-86 320.9 191 82.2
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 6.8e-86 320.9 191 83.2
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 8.9e-86 320.5 191 83.2
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 8.9e-86 320.5 192 82.3
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.2e-85 320.1 194 80.9
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.2e-85 320.1 191 80.1
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.2e-85 320.1 191 80.1
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 80.6
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 82.7
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 82.7
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 80.6
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 83.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 79.6
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.6e-85 318.9 191 81.7
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.6e-85 318.9 190 82.6
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 3.4e-85 318.5 189 81.0
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 83.8
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 83.8
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 7.6e-85 317.4 191 81.7
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 7.6e-85 317.4 191 82.2
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.3e-84 316.6 191 79.1
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 79.1
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 2.9e-84 315.5 191 82.7
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 3.8e-84 315.1 191 81.2
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 3.8e-84 315.1 193 77.7
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 3.8e-84 315.1 191 80.1
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 4.9e-84 314.7 194 79.9
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.4e-84 314.3 191 80.1
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 6.4e-84 314.3 191 80.6
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 8.4e-84 313.9 191 79.6
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.1e-83 313.5 191 79.6
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 1.1e-83 313.5 192 79.2
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.9e-83 312.8 191 81.7
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 9.2e-83 310.5 191 79.1
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 2.7e-82 308.9 191 79.1
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 3.5e-82 308.5 188 79.3
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 6.0e-82 307.8 191 77.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.3e-81 306.6 190 77.9
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 8.6e-81 303.9 180 85.6
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 1.5e-80 303.1 191 75.9
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 1.9e-80 302.8 191 79.1
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 4.0e-78 295.0 158 92.4
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.5e-77 293.1 191 72.8
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 7.6e-77 290.8 191 72.3
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 4.0e-70 268.5 191 66.5
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 2.4e-67 259.2 157 80.3
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.8e-65 253.1 188 62.2
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.3e-65 252.7 191 64.4
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.1e-65 251.5 191 63.4
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 2.5e-64 249.2 158 77.8
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 5.3e-62 241.5 148 83.1
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.0e-61 239.6 191 61.3
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.1e-57 224.9 185 57.3
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.5e-56 223.4 149 74.5
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.3e-56 221.9 185 56.2
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.2e-52 209.5 192 50.0
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.2e-52 209.5 149 69.8
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 9.3e-51 204.1 189 54.5
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.6e-47 193.4 189 50.8
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.0e-45 186.4 182 53.8
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.7e-44 183.3 95 96.8
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.5e-43 179.5 184 54.3
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 6.7e-41 171.4 189 50.8
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 1.5e-40 170.2 189 50.3
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 7.2e-35 151.4 91 79.1
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 2.5e-27 126.3 79 75.9
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 2.3e-25 119.8 185 37.3
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 4.8e-23 112.1 185 34.1
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 6.5e-20 101.7 51 90.2
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 5.9e-13 78.6 158 34.2
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 7.5e-08 61.6 28 96.4
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 2.8e-07 59.7 31 83.9


User provided reference genes

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