Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 2.2e-38 161.8 78 100.0
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.4e-29 130.6 68 88.2
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 5.4e-29 130.6 68 88.2
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.3e-27 125.9 66 89.4
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-27 125.9 66 89.4
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-27 125.9 66 89.4
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.3e-27 125.9 66 89.4
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 8.5e-27 123.2 71 80.3
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 2.5e-26 121.7 66 86.4
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 2.5e-26 121.7 66 86.4
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 7.2e-26 120.2 66 83.3
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 7.2e-26 120.2 66 84.8
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 7.2e-26 120.2 66 84.8
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 7.2e-26 120.2 66 84.8
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 2.1e-25 118.6 71 74.6
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.7e-25 118.2 66 80.3
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.0e-24 116.3 66 78.8
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.0e-24 114.8 71 70.4
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 4.0e-24 114.4 74 68.9
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 5.2e-24 114.0 66 78.8
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 6.8e-24 113.6 71 71.8
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 6.8e-24 113.6 71 70.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 6.8e-24 113.6 71 70.4
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 6.8e-24 113.6 66 75.8
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 8.8e-24 113.2 66 75.8
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 8.8e-24 113.2 71 70.4
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 8.8e-24 113.2 71 69.0
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.2e-23 112.8 66 75.8
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 1.2e-23 112.8 66 75.8
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.5e-23 112.5 66 75.8
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 2.0e-23 112.1 66 74.2
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.6e-23 111.7 66 77.3
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 2.6e-23 111.7 66 72.7
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 2.6e-23 111.7 66 72.7
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.6e-23 111.7 66 74.2
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 2.6e-23 111.7 71 69.0
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 2.6e-23 111.7 66 74.2
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 3.4e-23 111.3 66 75.8
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 3.4e-23 111.3 66 74.2
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 3.4e-23 111.3 71 69.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.4e-23 111.3 66 75.8
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.4e-23 111.3 71 69.0
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 3.4e-23 111.3 66 77.3
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 3.4e-23 111.3 71 70.4
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 3.4e-23 111.3 71 69.0
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 4.4e-23 110.9 71 69.0
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 4.4e-23 110.9 71 67.6
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 4.4e-23 110.9 71 69.0
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 4.4e-23 110.9 71 69.0
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 4.4e-23 110.9 71 69.0
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 4.4e-23 110.9 71 69.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 5.7e-23 110.5 66 74.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 5.7e-23 110.5 71 67.6
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 5.7e-23 110.5 71 67.6
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 5.7e-23 110.5 71 67.6
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 5.7e-23 110.5 71 67.6
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 7.5e-23 110.2 71 67.6
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 7.5e-23 110.2 71 67.6
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 9.8e-23 109.8 66 71.2
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 9.8e-23 109.8 66 72.7
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 9.8e-23 109.8 71 67.6
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 9.8e-23 109.8 66 72.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 9.8e-23 109.8 71 67.6
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.3e-22 109.4 71 69.0
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.3e-22 109.4 66 74.2
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.3e-22 109.4 66 74.2
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.7e-22 109.0 66 72.7
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.7e-22 109.0 71 67.6
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.7e-22 109.0 71 66.2
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.7e-22 109.0 71 67.6
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 2.2e-22 108.6 71 66.2
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 2.8e-22 108.2 71 69.0
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 2.8e-22 108.2 71 69.0
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 3.7e-22 107.8 66 74.2
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 3.7e-22 107.8 66 72.7
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 3.7e-22 107.8 66 74.2
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 3.7e-22 107.8 66 75.8
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 4.9e-22 107.5 71 66.2
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 4.9e-22 107.5 71 66.2
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 4.9e-22 107.5 71 66.2
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 8.3e-22 106.7 71 66.2
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.1e-21 106.3 66 69.7
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 1.1e-21 106.3 71 63.4
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 1.4e-21 105.9 66 69.7
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.4e-21 105.9 71 64.8
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.4e-21 105.1 71 63.4
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 3.1e-21 104.8 66 72.7
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 4.1e-21 104.4 71 60.6
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 4.1e-21 104.4 66 68.2
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 7.0e-21 103.6 71 62.0
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 7.0e-21 103.6 71 66.2
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.6e-20 102.4 51 96.1
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.6e-20 102.4 66 68.2
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 1.6e-20 102.4 71 63.4
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.7e-20 101.7 71 63.4
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.7e-19 99.0 66 62.1
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.7e-19 99.0 66 62.1
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 3.8e-19 97.8 66 65.2
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.5e-18 95.9 56 83.9
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.5e-18 95.9 56 83.9
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 1.5e-18 95.9 66 63.6
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 3.6e-17 91.3 111 43.2
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 8.0e-17 90.1 72 58.3
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.2e-15 86.3 66 54.5
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.6e-15 85.1 66 53.0
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 3.4e-15 84.7 70 51.4
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 2.2e-14 82.0 40 95.0
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.2e-12 76.3 80 50.0
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 1.6e-12 75.9 47 72.3
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.3e-11 72.8 48 66.7
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.0e-08 63.2 66 43.9


User provided reference genes

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