Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 2.2e-258 895.2 470 100.0
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 2.2e-258 895.2 470 100.0
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.2e-256 889.4 471 99.6
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 5.5e-254 880.6 493 95.1
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 6.7e-252 873.6 470 97.9
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 5.0e-247 857.4 470 96.0
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 5.5e-246 854.0 470 95.3
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 8.0e-245 850.1 470 95.7
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.8e-244 849.0 470 95.1
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.0e-243 845.5 470 95.3
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 7.5e-235 817.0 470 91.5
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 9.8e-235 816.6 470 91.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 6.3e-234 813.9 470 90.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.8e-233 812.4 470 91.1
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.4e-233 812.0 470 90.6
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 4.1e-233 811.2 470 90.4
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 5.4e-233 810.8 470 90.9
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-232 809.3 470 90.6
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 2.7e-232 808.5 470 90.6
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 2.7e-232 808.5 470 90.6
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-231 806.2 470 90.4
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.4e-228 796.2 497 85.5
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 5.4e-225 784.3 470 87.2
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.9e-222 775.8 469 85.7
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 3.3e-222 775.0 470 85.5
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 2.1e-221 772.3 470 85.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.6e-221 771.5 470 84.7
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.7e-221 771.2 470 85.5
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.7e-221 771.2 470 85.5
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 8.0e-221 770.4 470 85.5
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.0e-220 770.0 470 85.3
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.8e-220 769.2 470 84.9
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.2e-220 767.7 471 84.5
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.2e-219 766.5 470 85.7
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.2e-219 766.5 470 85.1
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.5e-219 766.1 470 85.1
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 2.6e-219 765.4 470 84.9
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 7.5e-219 763.8 470 85.3
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 7.5e-219 763.8 470 84.0
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 9.8e-219 763.5 470 84.7
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.9e-218 761.9 470 84.9
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 4.9e-218 761.1 470 83.4
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.9e-218 761.1 470 84.0
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 1.1e-217 760.0 470 84.3
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.2e-217 758.4 470 84.0
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 5.4e-217 757.7 470 84.7
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 7.0e-217 757.3 470 82.1
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 9.2e-217 756.9 470 83.6
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.6e-216 756.1 470 83.6
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.6e-216 756.1 470 82.8
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 2.7e-216 755.4 470 83.4
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 3.5e-216 755.0 471 83.2
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.0e-215 753.4 470 82.8
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 3.9e-215 751.5 470 83.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.9e-215 751.5 470 83.0
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.9e-215 751.5 472 83.3
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 5.0e-215 751.1 469 82.3
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 5.0e-215 751.1 470 82.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.1e-214 750.0 470 82.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.9e-214 749.2 470 83.0
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.5e-214 748.8 470 82.1
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 2.5e-214 748.8 470 82.3
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 4.3e-214 748.0 507 78.5
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 5.6e-214 747.7 470 81.9
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 9.5e-214 746.9 469 82.5
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.2e-213 746.5 471 82.2
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.8e-213 745.3 471 82.0
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.3e-212 742.3 469 83.2
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 4.0e-212 741.5 471 82.2
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 4.0e-212 741.5 507 78.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 5.2e-212 741.1 466 82.4
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 3.4e-211 738.4 469 82.1
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 5.8e-211 737.6 471 82.0
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 9.8e-211 736.9 471 81.1
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.9e-209 732.6 470 81.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 3.2e-209 731.9 470 83.0
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 9.2e-209 730.3 494 78.3
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.2e-208 729.9 470 80.6
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 3.5e-208 728.4 470 81.7
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.4e-204 716.5 545 72.1
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 4.0e-204 714.9 450 83.3
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.0e-199 698.7 470 78.7
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 8.6e-199 697.2 471 78.1
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.2e-197 693.3 442 82.1
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.5e-195 686.4 492 75.0
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 6.4e-194 681.0 471 77.1
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 4.2e-193 678.3 493 73.2
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 4.7e-189 664.8 419 83.1
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 3.1e-188 662.1 419 81.6
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 3.1e-188 662.1 419 81.6
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.9e-186 655.6 398 86.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.6e-184 649.8 426 80.8
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 6.6e-183 644.4 470 70.4
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 6.6e-183 644.4 469 75.5
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 9.6e-182 640.6 462 74.5
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.7e-175 617.5 470 71.7
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.6e-173 613.2 424 76.7
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 4.8e-173 611.7 384 83.9
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 3.9e-167 592.0 466 67.2
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 4.3e-166 588.6 313 98.1
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 6.7e-159 564.7 375 78.1
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 1.1e-158 563.9 470 65.7
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 7.4e-158 561.2 341 87.4
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.8e-156 556.6 351 80.9
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 2.0e-155 553.1 374 76.5
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 3.8e-154 548.9 471 60.3
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 4.2e-153 545.4 366 79.2
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 3.6e-144 515.8 325 84.3
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.4e-127 460.7 283 86.2
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.8e-122 442.6 325 74.8
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 3.6e-120 436.0 366 65.6
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.9e-106 389.8 247 83.8
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 2.2e-85 320.5 313 59.7
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 6.2e-80 302.4 182 80.2
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.1e-80 302.0 302 55.0
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 2.4e-79 300.4 160 100.0
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 4.0e-79 299.7 238 68.5
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.8e-79 298.9 173 85.5
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.6e-78 297.0 505 37.2
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.4e-71 274.6 210 60.0
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.2e-68 263.5 408 45.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.1e-68 262.3 295 52.2
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 7.1e-68 262.3 140 100.0
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.9e-52 211.1 331 38.1
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 5.5e-52 209.5 119 93.3
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 9.3e-52 208.8 196 63.8
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 5.3e-47 193.0 486 31.5
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.1e-43 179.5 107 80.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.1e-43 179.5 111 86.5
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.4e-41 172.6 105 81.0
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 3.7e-40 170.2 111 80.2
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-36 157.1 91 89.0
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 2.5e-33 147.5 81 95.1
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.4e-30 137.1 76 86.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.6e-27 128.3 72 90.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 3.6e-27 127.1 72 87.5
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.3e-26 124.4 74 81.1
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.0e-25 121.3 72 81.9
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.3e-25 120.6 74 79.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.7e-24 117.1 79 74.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 3.8e-21 107.1 99 56.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.5e-20 103.2 57 82.5
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.0e-18 99.0 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 7.4e-17 92.8 52 94.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-13 80.5 47 87.2
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-12 77.8 46 91.3
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.2e-12 76.3 52 80.8
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-10 72.0 55 76.4
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 2.0e-09 68.2 74 50.0


User provided reference genes

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