Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.3e-150 535.4 249 100.0
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-149 533.1 249 99.6
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.1e-149 533.1 249 99.6
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.8e-142 509.2 249 94.8
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 3.0e-142 508.4 249 94.8
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 3.7e-140 501.5 253 92.1
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 8.5e-137 490.3 251 89.6
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 5.5e-136 487.6 256 86.7
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 6.1e-135 484.2 255 86.7
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 8.8e-134 480.3 256 85.5
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.1e-133 479.9 249 88.4
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.5e-133 479.6 256 85.5
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.8e-131 472.6 251 84.9
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 7.0e-131 470.7 246 87.8
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 2.0e-130 469.2 246 87.8
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 3.5e-130 468.4 246 87.8
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 4.5e-130 468.0 250 86.4
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.9e-129 465.3 246 87.4
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 2.9e-129 465.3 246 87.4
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 8.5e-129 463.8 256 82.4
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.8e-126 456.1 248 82.3
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.3e-125 451.8 247 81.8
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 7.5e-125 450.7 253 81.4
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.7e-124 449.5 242 83.5
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 6.3e-124 447.6 254 79.5
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.4e-123 446.4 242 82.6
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.8e-123 446.0 244 80.3
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.4e-123 445.7 242 82.6
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.1e-123 445.3 253 79.8
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 7.0e-123 444.1 245 80.8
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 9.1e-123 443.7 242 82.6
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.6e-122 443.0 241 81.7
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.0e-122 442.6 242 80.6
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.5e-122 441.8 242 81.8
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 4.5e-122 441.4 234 84.2
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 5.9e-122 441.0 255 78.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.7e-122 440.7 242 81.4
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.7e-122 440.7 255 77.3
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.3e-121 439.9 253 79.1
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.3e-121 439.9 252 79.0
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.3e-121 439.9 246 79.3
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.2e-121 439.1 242 81.0
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.2e-121 439.1 255 76.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.2e-121 439.1 254 78.3
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 2.9e-121 438.7 255 77.3
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.8e-121 438.3 242 81.0
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 3.8e-121 438.3 234 83.3
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.5e-120 436.4 257 77.4
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.5e-120 436.4 242 81.4
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 2.5e-120 435.6 237 81.4
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 3.2e-120 435.3 233 82.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.2e-120 435.3 245 79.2
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 3.2e-120 435.3 237 81.9
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 5.5e-120 434.5 253 77.1
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 7.2e-120 434.1 245 78.0
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 9.4e-120 433.7 244 81.1
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.6e-119 433.0 233 82.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 2.1e-119 432.6 245 78.8
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.7e-119 431.4 257 74.7
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 8.0e-119 430.6 245 79.2
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 8.0e-119 430.6 253 77.5
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.0e-118 430.3 253 76.7
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.0e-118 430.3 233 82.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.2e-118 427.9 253 75.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 5.2e-118 427.9 233 81.1
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.5e-117 426.4 231 81.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.0e-117 426.0 252 74.6
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.6e-117 425.6 241 78.4
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.4e-117 425.2 241 78.4
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 4.4e-117 424.9 253 73.9
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 5.7e-117 424.5 239 78.2
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 7.5e-117 424.1 244 76.6
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 9.8e-117 423.7 241 78.0
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.3e-116 423.3 238 78.6
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.7e-116 422.9 249 73.9
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.7e-116 422.9 247 74.5
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.2e-116 422.5 233 78.1
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 2.8e-116 422.2 250 75.2
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 2.8e-116 422.2 244 75.4
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 3.7e-116 421.8 232 80.2
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 3.7e-116 421.8 243 77.0
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 6.3e-116 421.0 247 76.5
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 6.3e-116 421.0 226 80.5
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 8.3e-116 420.6 244 76.2
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-115 420.2 249 73.5
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.4e-115 419.9 243 74.5
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-115 419.5 243 77.0
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.4e-115 419.1 246 76.0
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.4e-115 419.1 245 74.3
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 5.4e-115 417.9 248 75.4
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 7.0e-115 417.5 240 75.8
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 9.1e-115 417.2 240 75.4
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 9.1e-115 417.2 243 73.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.2e-114 416.8 229 79.0
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.0e-114 416.0 250 75.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.0e-114 416.0 231 78.4
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 2.7e-114 415.6 229 80.3
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 2.7e-114 415.6 231 77.9
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.5e-114 415.2 237 77.6
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.5e-114 414.8 243 73.7
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 7.7e-114 414.1 250 73.6
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-113 413.7 250 72.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.7e-113 412.9 227 78.4
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.3e-113 412.5 239 74.5
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.9e-113 412.1 248 71.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 6.5e-113 411.0 239 75.3
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.6e-113 410.6 237 73.8
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.5e-112 409.8 247 72.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.9e-112 409.5 242 74.8
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.9e-112 409.5 237 73.8
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 3.2e-112 408.7 246 74.4
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.2e-112 408.7 250 72.8
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 4.2e-112 408.3 234 75.6
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 4.2e-112 408.3 240 75.4
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 7.2e-112 407.5 250 69.6
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 7.2e-112 407.5 251 72.9
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 7.2e-112 407.5 241 75.5
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 7.2e-112 407.5 231 77.1
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 9.5e-112 407.1 240 72.5
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 9.5e-112 407.1 230 74.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.2e-111 406.8 228 78.1
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.6e-111 406.4 248 70.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.1e-111 406.0 242 74.4
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.1e-111 406.0 252 73.0
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 3.6e-111 405.2 239 72.4
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.7e-111 404.8 240 73.3
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 4.7e-111 404.8 242 74.8
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.7e-111 404.8 228 75.4
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-110 402.9 251 71.3
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.0e-110 402.1 244 71.7
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 4.0e-110 401.7 239 74.1
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.8e-110 401.0 251 70.5
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.8e-110 400.6 247 71.3
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 7.5e-109 397.5 251 70.9
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 6.3e-108 394.4 226 75.2
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.2e-106 390.2 222 78.4
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.5e-106 388.7 231 72.7
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.3e-104 380.9 239 69.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.2e-103 380.2 239 71.1
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.6e-103 378.6 226 72.6
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.2e-101 373.6 209 83.3
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.2e-100 369.4 224 71.4
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.4e-99 366.7 245 68.2
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.1e-96 357.1 239 64.9
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 4.7e-95 351.7 251 62.2
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 8.0e-95 350.9 234 66.7
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 4.4e-93 345.1 223 67.3
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.9e-91 339.7 251 61.8
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 2.4e-91 339.3 224 66.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.0e-90 336.3 228 64.0
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.3e-89 332.8 243 64.2
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 6.2e-79 298.1 172 78.5
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.4e-78 296.2 252 56.0
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.9e-76 288.5 156 79.5
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 8.4e-76 287.7 159 77.4
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.8e-60 235.7 159 64.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 4.3e-56 222.2 220 50.0
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.9e-53 211.1 228 47.8
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.2e-44 183.3 200 48.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.7e-39 166.0 96 78.1
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 2.8e-31 139.8 121 59.5
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.3e-28 131.0 116 54.3
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.3e-23 114.4 63 81.0
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 2.9e-12 76.6 51 54.9
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 6.5e-12 75.5 64 54.7


User provided reference genes

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