Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 2102.0 1064 100.0
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 2100.9 1064 99.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 2098.6 1064 99.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 2070.4 1064 98.5
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 2070.4 1064 98.5
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 2039.2 1066 96.9
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 2015.7 1070 95.7
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1978.0 1070 93.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1969.1 1070 92.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1951.4 1067 91.8
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1943.3 1070 91.3
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1942.2 1071 90.9
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1856.6 1104 85.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1794.6 1085 82.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1775.8 1064 83.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1661.4 1076 75.9
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1608.6 1089 72.9
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1607.0 1089 73.6
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1083 72.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1603.2 1087 73.8
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1592.0 1088 72.6
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1592.0 1087 72.5
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1077 73.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1074 74.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1090 72.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1590.1 1079 73.4
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1082 73.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1079 73.2
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1586.6 1074 73.9
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1086 72.0
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1093 72.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1069 72.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1085 72.4
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1077 73.2
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1080 72.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1084 72.3
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1080 72.4
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1083 71.9
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1569.3 1075 72.0
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1081 72.4
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1083 71.1
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1083 71.1
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1079 71.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1560.0 1085 72.0
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1076 72.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1084 71.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1076 71.8
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1555.0 1075 72.1
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1091 70.7
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1087 71.3
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1551.2 1088 70.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1081 71.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1079 70.2
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1108 70.0
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 1075 71.6
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1079 70.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1079 70.3
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 1085 70.4
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1087 70.2
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1087 70.3
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1540.4 1087 70.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1537.3 1084 70.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1535.8 1099 68.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1535.8 1082 70.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1084 70.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1535.0 1091 70.4
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1091 70.5
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1076 69.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1070 70.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1084 69.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1530.4 1170 66.8
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 1074 71.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1170 66.7
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 1088 68.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1517.7 1105 69.0
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1514.6 1088 69.9
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1514.2 1078 70.4
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1513.4 1075 70.0
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1075 70.0
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1509.2 1075 70.1
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1074 69.7
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1081 68.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1493.0 1090 67.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1074 69.4
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1490.7 1085 68.8
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1489.9 1081 68.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1487.6 1077 69.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1484.2 1076 69.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1484.2 1140 65.3
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1483.0 1087 68.4
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1480.3 1082 68.9
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1469.9 1084 68.4
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1468.8 1075 67.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1468.8 1077 67.3
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1464.9 993 73.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1464.1 1098 66.5
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1463.7 1077 68.4
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1462.6 1010 72.1
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1462.2 1077 67.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1452.2 1075 66.1
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1439.1 1049 67.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1420.6 1093 64.2
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1419.1 996 71.7
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1417.9 1082 65.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1414.4 1077 65.1
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1413.3 1101 66.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1407.9 981 71.8
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1377.1 1097 62.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1371.7 1075 65.2
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1361.3 1080 65.0
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1274.2 1073 62.8
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1245.0 787 77.3
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1152.9 1069 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1139.0 1079 52.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 1111 51.9
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1120.1 671 81.8
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1119.8 1078 52.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1119.4 689 80.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1118.6 717 77.1
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1114.4 1077 51.8
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.2e-283 980.3 753 66.7
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 8.6e-279 964.1 831 57.4
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 9.5e-270 934.1 609 75.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.0e-263 914.1 812 58.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.0e-247 859.4 938 48.1
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.4e-241 839.7 629 68.7
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.1e-236 824.3 499 79.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.0e-207 726.5 635 59.8
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.0e-191 674.9 973 43.2
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.2e-160 571.6 429 67.4
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 8.9e-159 565.5 565 53.3
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-145 521.9 303 80.9
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.8e-128 464.2 312 71.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 7.9e-107 392.9 383 54.3
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 8.3e-64 250.0 286 47.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.1e-63 248.1 205 60.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.3e-61 242.7 136 78.7
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.5e-57 229.2 241 51.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 4.1e-47 194.5 138 62.3
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 8.1e-35 153.7 238 41.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 5.1e-29 134.4 133 53.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.1e-28 133.3 72 84.7
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.5e-28 132.9 156 45.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 5.8e-25 120.9 108 55.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.4e-24 117.1 97 60.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 8.6e-21 107.1 88 59.1
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.3e-12 78.6 49 65.3
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 9.6e-12 77.0 50 74.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 4.8e-11 74.7 76 46.1
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 2.9e-08 65.5 33 90.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 3.8e-08 65.1 120 39.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.4e-07 63.2 39 71.8
Mapoly0034s0060 Marchantia polymorpha HOM05D000418 ORTHO05D000317 2.1e-06 59.3 327 23.9
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 2.1e-06 59.3 66 50.0


User provided reference genes

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