Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-185 653.7 403 100.0
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-185 653.7 403 100.0
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-185 653.7 403 100.0
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 4.0e-183 645.2 403 99.5
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 2.6e-182 642.5 403 98.8
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 2.6e-182 642.5 403 98.8
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 7.2e-177 624.4 403 97.0
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.1e-172 610.5 388 97.4
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 3.8e-170 602.1 403 93.5
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 5.0e-170 601.7 403 93.3
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.1e-169 600.5 390 95.6
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.4e-167 593.6 402 88.3
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.9e-163 578.2 403 91.1
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-158 563.1 404 75.0
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.5e-153 546.2 404 76.0
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-138 496.9 415 67.7
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.8e-135 486.9 392 67.1
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 1.8e-135 486.9 392 79.6
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 5.2e-135 485.3 404 77.7
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.6e-134 483.0 392 80.1
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 4.4e-134 482.3 392 79.3
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 4.4e-134 482.3 392 79.3
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.3e-133 480.7 414 76.3
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.3e-133 480.7 392 74.5
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.7e-133 480.3 390 70.3
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.7e-133 480.3 404 77.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.9e-133 479.6 392 72.4
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 8.4e-133 478.0 405 78.0
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.4e-132 477.2 401 72.6
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.9e-132 476.9 408 76.5
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.4e-132 476.5 404 76.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.4e-132 476.5 404 77.0
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 2.4e-132 476.5 404 76.5
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.2e-132 476.1 404 77.0
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 5.4e-132 475.3 404 76.7
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 7.1e-132 474.9 404 76.0
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.2e-131 474.2 393 75.3
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.6e-131 473.8 404 76.0
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.1e-131 473.4 404 67.8
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 3.5e-131 472.6 405 74.1
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 4.6e-131 472.2 392 77.0
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 6.0e-131 471.9 392 77.8
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 6.0e-131 471.9 392 77.6
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 6.0e-131 471.9 392 77.3
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 6.0e-131 471.9 402 76.4
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.0e-130 471.1 401 75.8
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.3e-130 470.7 392 72.7
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.3e-130 470.7 392 72.7
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.3e-130 469.9 392 72.7
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 3.0e-130 469.5 393 78.1
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 3.9e-130 469.2 401 64.8
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.9e-130 469.2 393 76.3
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 3.9e-130 469.2 392 77.3
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 6.6e-130 468.4 401 76.3
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 8.6e-130 468.0 404 75.7
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 8.6e-130 468.0 392 78.1
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.1e-129 467.6 391 76.0
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.9e-129 466.8 393 72.0
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.5e-129 466.5 404 76.5
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 3.3e-129 466.1 392 77.0
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 3.3e-129 466.1 404 76.7
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 4.3e-129 465.7 392 78.1
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 9.6e-129 464.5 405 71.4
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 2.8e-128 463.0 392 76.3
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 3.6e-128 462.6 392 78.8
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 3.6e-128 462.6 387 78.6
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.4e-127 460.7 393 76.8
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.8e-127 460.3 404 68.1
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.1e-127 459.5 407 64.9
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 4.0e-127 459.1 391 76.5
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 4.0e-127 459.1 392 71.2
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 5.2e-127 458.8 392 76.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 8.9e-127 458.0 409 66.7
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.5e-126 457.2 425 62.8
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.4e-126 456.1 392 77.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.6e-126 454.9 425 62.6
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.3e-125 454.1 392 75.0
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 1.3e-125 454.1 393 76.3
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.2e-125 453.4 391 66.8
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-124 451.1 406 65.8
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-124 451.1 406 65.8
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.4e-124 450.7 391 74.7
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 3.2e-124 449.5 407 72.5
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 4.2e-124 449.1 395 65.6
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.2e-124 449.1 405 66.9
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 5.4e-124 448.7 414 64.7
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 5.4e-124 448.7 391 66.2
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 9.3e-124 448.0 392 68.1
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 9.3e-124 448.0 392 68.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 9.3e-124 448.0 405 66.7
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 9.3e-124 448.0 391 66.0
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 2.7e-123 446.4 391 77.2
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 7.8e-123 444.9 402 73.9
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 7.8e-123 444.9 403 68.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.3e-122 444.1 392 63.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.1e-121 441.0 392 65.1
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.5e-121 440.7 402 71.1
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 9.6e-121 438.0 417 62.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-118 430.3 429 60.1
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 4.5e-118 429.1 392 60.7
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.5e-118 429.1 404 63.4
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 2.2e-117 426.8 388 72.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.4e-116 424.1 521 57.4
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.2e-116 422.5 402 70.1
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.6e-115 420.6 392 72.4
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.3e-114 417.5 407 63.1
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 3.0e-114 416.4 414 60.6
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 2.5e-113 413.3 395 60.5
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 7.4e-113 411.8 354 76.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.1e-112 410.2 530 56.0
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.4e-111 407.5 392 71.9
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.4e-111 406.8 392 71.7
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.0e-111 406.0 421 59.4
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 9.0e-111 404.8 392 71.4
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.2e-110 404.4 392 70.9
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 5.8e-110 402.1 432 56.9
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 7.1e-108 395.2 401 65.3
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 8.7e-106 388.3 392 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 2.8e-104 383.3 402 62.9
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.1e-103 381.3 401 63.3
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.2e-101 373.6 391 63.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.1e-97 361.3 407 54.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 2.5e-97 360.1 370 57.0
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 2.5e-97 360.1 447 45.2
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.3e-97 359.4 392 53.3
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.2e-96 355.1 409 53.5
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 7.6e-94 348.6 314 79.3
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 4.6e-91 339.3 260 76.2
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 7.9e-91 338.6 391 52.7
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 6.7e-90 335.5 260 75.8
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.1e-87 328.2 404 58.2
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-87 327.0 386 50.3
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 5.9e-86 322.4 253 74.3
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.3e-82 310.5 385 47.8
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 8.8e-82 308.5 319 62.1
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.7e-81 305.8 335 56.4
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.4e-76 291.2 372 48.7
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.3e-69 268.1 415 44.1
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.7e-64 251.1 198 61.1
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.8e-64 250.4 398 39.9
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.1e-63 246.9 293 68.6
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.0e-58 231.9 293 47.4
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 4.0e-58 229.9 297 47.1
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.5e-57 228.0 377 45.4
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 4.1e-55 219.9 190 59.5
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.4e-42 178.3 121 69.4
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 8.9e-42 175.6 101 78.2
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.4e-39 168.3 101 75.2
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.5e-38 163.7 132 59.8
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 1.1e-36 158.7 84 84.5
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.2e-35 155.2 374 35.0
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 1.8e-34 151.4 101 69.3
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.3e-34 151.0 90 83.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 6.4e-32 142.9 95 75.8
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 5.4e-31 139.8 104 70.2
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.2e-30 138.7 181 42.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.3e-29 135.2 150 50.0
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 6.6e-29 132.9 79 81.0
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.0e-25 121.3 293 36.2
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.4e-23 115.2 86 65.1
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 2.4e-23 114.4 120 65.8
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.1e-22 111.3 76 69.7
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 3.5e-22 110.5 56 83.9
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.5e-20 104.4 164 37.8
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 6.8e-18 96.3 67 62.7
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.9e-18 95.9 50 76.0
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.7e-13 81.6 59 61.0
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.5e-12 78.6 47 72.3
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.9e-12 78.2 40 80.0
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.3e-12 76.3 100 40.0
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 9.6e-12 75.9 41 75.6
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.2e-11 75.5 39 79.5
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 3.6e-11 73.9 40 80.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 3.6e-11 73.9 40 80.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.1e-10 72.4 39 74.4
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 7.6e-09 66.2 100 38.0
C03p42670 Brassica napus HOM05D003606 ORTHO05D016710 2.2e-08 64.7 140 32.1
C03p67300 Brassica napus HOM05D003606 ORTHO05D016710 2.2e-08 64.7 140 32.1
BolSC21t60295H Brassica oleracea HOM05D003606 ORTHO05D016710 2.2e-08 64.7 140 32.1
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 8.4e-08 62.8 35 71.4
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 8.4e-08 62.8 40 62.5
BolC2t06237H Brassica oleracea HOM05D003606 ORTHO05D016710 4.2e-07 60.5 140 32.9
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.7e-06 57.8 82 39.0
Cre12.g527500 Chlamydomonas reinhardtii HOM05D002634 ORTHO05D003100 7.8e-06 56.2 72 40.3
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 7.8e-06 56.2 58 44.8
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 7.8e-06 56.2 41 53.7


User provided reference genes

Program Settings