Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.3e-90 335.5 164 100.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.3e-90 335.5 164 100.0
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.5e-86 321.2 170 93.5
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.0e-85 320.1 170 92.9
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.4e-84 316.2 171 92.4
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 3.2e-84 315.1 171 91.8
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 3.2e-84 315.1 171 91.8
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 7.2e-84 313.9 171 91.8
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.2e-84 313.9 170 90.6
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 9.4e-84 313.5 170 90.0
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-83 313.2 172 90.7
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-83 312.8 170 90.0
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.1e-83 312.4 171 91.2
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 6.1e-83 310.8 170 90.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 6.1e-83 310.8 170 90.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 7.9e-83 310.5 170 88.8
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.8e-82 309.3 170 89.4
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.5e-81 306.2 170 87.1
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.3e-81 305.1 170 87.6
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 9.7e-81 303.5 170 89.4
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.3e-80 303.1 171 87.7
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-80 302.8 170 87.6
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.4e-79 299.7 170 85.3
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.9e-79 297.4 170 85.3
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.2e-77 292.4 170 82.9
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.3e-74 282.3 170 83.5
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 5.2e-74 281.2 170 80.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.1e-73 280.0 167 82.6
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 168 79.8
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.7e-72 275.0 170 80.6
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 3.1e-71 271.9 163 79.8
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 4.1e-71 271.6 163 81.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.3e-71 271.2 170 78.2
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 5.3e-71 271.2 170 75.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 7.0e-71 270.8 170 78.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.0e-71 270.8 170 78.8
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 7.0e-71 270.8 163 79.1
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.2e-70 270.0 163 79.8
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.2e-70 270.0 170 78.8
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 78.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.6e-70 269.6 165 78.8
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.0e-70 269.2 157 82.2
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.6e-70 268.9 171 77.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 5.9e-70 267.7 170 78.2
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-69 266.9 168 78.0
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.3e-69 266.5 172 79.1
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.7e-69 266.2 168 76.8
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.7e-69 266.2 168 78.0
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-69 266.2 168 78.0
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-69 266.2 168 78.0
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-69 265.8 168 77.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-69 265.8 168 77.4
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.8e-69 265.0 168 78.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.5e-69 264.2 168 77.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.5e-69 264.2 170 76.5
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 6.5e-69 264.2 157 81.5
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 8.5e-69 263.8 168 76.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.5e-68 263.1 152 82.9
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.9e-68 262.7 170 75.9
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.9e-68 262.7 170 75.9
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.9e-68 262.7 169 75.1
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 3.2e-68 261.9 170 75.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 4.2e-68 261.5 153 81.7
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.2e-68 261.5 170 74.7
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 7.2e-68 260.8 158 80.4
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 7.2e-68 260.8 158 80.4
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.7e-67 258.8 177 71.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.7e-67 258.8 168 75.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 6.1e-67 257.7 178 72.5
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.1e-67 257.7 170 74.7
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 6.1e-67 257.7 168 74.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 8.0e-67 257.3 170 73.5
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.0e-67 257.3 170 74.7
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.0e-66 256.9 170 76.5
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.0e-66 255.4 151 79.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.0e-66 255.0 170 72.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.2e-66 254.6 173 75.1
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 8.8e-66 253.8 178 71.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 8.8e-66 253.8 170 73.5
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 8.8e-66 253.8 173 72.8
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 3.3e-65 251.9 162 74.7
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.4e-65 251.5 168 74.4
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 4.4e-65 251.5 173 74.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 4.4e-65 251.5 166 74.1
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.7e-65 251.1 152 77.6
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 5.7e-65 251.1 168 73.8
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 7.5e-65 250.8 164 74.4
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 9.7e-65 250.4 170 75.3
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 9.7e-65 250.4 151 78.1
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 9.7e-65 250.4 178 69.7
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 9.7e-65 250.4 176 72.2
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-64 250.0 153 77.8
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.7e-64 249.6 149 78.5
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.2e-64 249.2 151 77.5
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.2e-64 249.2 168 73.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.2e-64 249.2 172 70.9
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.2e-64 249.2 164 74.4
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.2e-64 249.2 176 72.2
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 2.8e-64 248.8 148 80.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 2.8e-64 248.8 174 71.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 6.3e-64 247.7 161 75.2
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 8.2e-64 247.3 170 71.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 8.2e-64 247.3 163 73.6
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 8.2e-64 247.3 178 69.1
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.4e-63 246.5 149 79.2
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.8e-63 246.1 174 72.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.4e-63 245.7 172 72.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.1e-63 245.4 155 76.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 3.1e-63 245.4 162 74.1
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.1e-63 245.4 170 71.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.1e-63 245.0 155 74.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 7.0e-63 244.2 170 70.0
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-62 243.4 178 69.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.2e-62 243.4 174 72.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.2e-62 243.4 174 72.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.6e-62 243.0 164 73.8
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.6e-62 243.0 161 74.5
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 4.5e-62 241.5 174 71.3
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.5e-62 241.5 164 70.1
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 4.5e-62 241.5 152 75.7
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.0e-61 240.4 151 77.5
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.7e-61 239.6 175 70.9
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.7e-61 239.6 175 70.9
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.9e-61 238.8 152 74.3
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 5.0e-61 238.0 153 76.5
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.1e-60 236.9 155 74.2
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.1e-60 236.9 155 74.2
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.1e-60 236.9 152 75.0
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.5e-60 236.5 161 73.3
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.5e-60 235.7 152 74.3
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 4.2e-60 235.0 172 70.3
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 5.5e-60 234.6 175 69.1
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.6e-59 233.0 168 67.9
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 8.0e-59 230.7 159 71.1
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 6.8e-58 227.6 228 53.9
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.3e-56 220.7 146 71.2
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 4.1e-55 218.4 160 68.1
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 5.4e-55 218.0 138 73.2
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.7e-54 215.7 122 78.7
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.5e-54 215.3 149 69.8
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.3e-53 213.4 136 75.7
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.5e-52 207.2 152 66.4
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 8.0e-51 204.1 124 76.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.6e-49 199.1 164 66.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.7e-48 195.3 142 64.8
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.7e-46 189.1 105 82.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.1e-39 167.2 134 62.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.0e-38 162.9 133 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.7e-38 162.5 134 60.4
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.7e-38 162.5 161 51.6
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.3e-37 159.5 134 58.2
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-36 156.8 158 53.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 7.3e-36 154.5 108 75.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-33 147.1 88 86.4
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 4.4e-33 145.2 68 98.5
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.1e-31 140.6 164 51.8
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 3.9e-29 132.1 112 64.3
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.9e-28 129.8 86 77.9
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 9.5e-28 127.5 120 51.7
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.2e-23 112.5 105 61.9
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.6e-22 108.6 99 55.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 4.6e-22 108.6 98 59.2
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 5.1e-21 105.1 55 81.8
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-20 102.8 171 37.4
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-20 102.4 127 40.9
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-20 102.4 127 40.9
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.6e-20 101.7 132 39.4
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.6e-19 100.1 65 67.7
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 8.1e-19 97.8 65 70.8
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.2e-15 85.5 55 74.5
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 2.1e-14 83.2 64 60.9
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 4.6e-14 82.0 96 41.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 4.6e-14 82.0 96 41.7
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.6e-12 75.1 42 69.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 9.6e-12 74.3 95 38.9
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.7e-08 63.5 95 41.1


User provided reference genes

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