Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 1.5e-147 526.2 264 100.0
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 8.7e-140 500.4 264 96.6
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 1.5e-120 436.4 220 99.5
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 7.7e-120 434.1 220 99.1
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 1.1e-118 430.3 220 98.2
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 1.6e-109 399.8 218 93.1
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 7.0e-105 384.4 223 87.4
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 2.0e-96 356.3 226 83.2
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 2.0e-96 356.3 226 83.2
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 3.5e-96 355.5 225 83.6
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 3.5e-96 355.5 225 83.6
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 4.5e-96 355.1 225 83.1
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 4.5e-96 355.1 225 83.1
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 7.7e-96 354.4 221 84.2
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.1e-94 350.5 226 82.3
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.1e-94 350.5 226 82.3
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 1.9e-94 349.7 224 82.1
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 5.5e-94 348.2 223 83.0
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.2e-93 347.1 223 82.5
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 1.2e-93 347.1 228 80.7
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 1.6e-93 346.7 231 80.5
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 2.8e-90 335.9 222 80.2
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 5.4e-89 331.6 224 79.9
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 1.1e-70 270.8 228 69.7
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 1.8e-52 210.3 229 58.1
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 9.2e-49 198.0 233 54.9
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 5.1e-47 192.2 234 56.4
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 1.0e-31 141.4 237 46.8
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.3e-30 136.0 233 44.2
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 9.6e-30 134.8 227 44.1
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 9.6e-30 134.8 233 46.4
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.6e-29 134.0 229 48.5
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 3.6e-29 132.9 234 43.6
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 4.8e-29 132.5 242 44.2
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 6.2e-29 132.1 235 43.8
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 8.1e-29 131.7 231 44.6
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 1.4e-28 131.0 231 43.7
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 2.4e-28 130.2 240 42.9
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 2.4e-28 130.2 240 43.3
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 3.1e-28 129.8 226 44.7
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 3.1e-28 129.8 232 43.5
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 4.0e-28 129.4 228 43.0
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 5.3e-28 129.0 236 41.9
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 5.3e-28 129.0 227 45.4
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 6.9e-28 128.6 228 45.6
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 9.0e-28 128.3 232 43.1
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 1.2e-27 127.9 242 43.0
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.2e-27 127.9 242 43.0
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 1.2e-27 127.9 223 41.7
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 1.5e-27 127.5 228 44.7
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 2.0e-27 127.1 230 43.9
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 2.6e-27 126.7 225 43.6
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 3.4e-27 126.3 225 44.0
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 3.4e-27 126.3 227 45.4
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 7.6e-27 125.2 227 43.2
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 7.6e-27 125.2 242 42.1
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 7.6e-27 125.2 242 42.1
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 7.6e-27 125.2 227 44.9
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.3e-26 124.4 239 40.2
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.3e-26 124.4 232 42.7
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.3e-26 124.4 226 44.7
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 1.3e-26 124.4 236 42.8
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 1.7e-26 124.0 238 40.3
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 1.7e-26 124.0 225 43.1
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 2.2e-26 123.6 242 39.7
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 2.2e-26 123.6 228 43.4
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 2.2e-26 123.6 237 41.8
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 2.9e-26 123.2 246 41.1
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.9e-26 123.2 229 43.2
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 2.9e-26 123.2 226 42.9
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 4.9e-26 122.5 232 43.5
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.9e-26 122.5 222 42.8
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 4.9e-26 122.5 226 42.9
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.1e-25 121.3 230 44.3
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 1.4e-25 120.9 223 40.4
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.4e-25 120.9 225 43.1
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.4e-25 120.2 241 41.5
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.4e-25 120.2 229 41.9
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.4e-25 120.2 229 41.9
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 3.2e-25 119.8 230 39.1
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 4.2e-25 119.4 242 41.3
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 4.2e-25 119.4 233 39.9
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 4.2e-25 119.4 224 41.5
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 7.1e-25 118.6 224 40.6
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 7.1e-25 118.6 220 40.9
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 9.3e-25 118.2 224 41.1
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.2e-24 117.9 228 42.5
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 4.6e-24 115.9 251 37.1
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.0e-24 115.5 250 40.8
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.0e-24 115.5 250 40.8
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.0e-23 114.8 222 41.0
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 1.0e-23 114.8 225 40.0
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 1.0e-23 114.8 240 41.2
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 1.0e-23 114.8 237 40.1
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 1.3e-23 114.4 227 40.5
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 6.7e-23 112.1 222 38.3
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 8.7e-23 111.7 230 39.1
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.1e-22 111.3 228 39.0
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.5e-22 110.9 226 41.6
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.5e-22 110.9 218 39.9
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.5e-22 110.2 231 42.4
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 4.3e-22 109.4 227 42.3
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 7.4e-22 108.6 227 41.0
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 9.6e-22 108.2 223 39.9
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 1.6e-21 107.5 212 43.4
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 1.6e-21 107.5 239 37.2
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 2.1e-21 107.1 267 36.3
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 4.8e-21 105.9 224 37.5
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 4.8e-21 105.9 229 41.0
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.1e-20 104.8 221 36.7
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 1.1e-20 104.8 240 37.9
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.1e-20 104.8 222 36.5
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 1.8e-20 104.0 239 38.1
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 2.6e-19 100.1 215 37.7
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.8e-19 99.0 226 35.0
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.7e-18 97.4 221 36.7
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.2e-18 97.1 224 39.3
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.9e-18 96.7 232 34.9
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.9e-18 95.9 228 34.2
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 4.9e-18 95.9 217 34.1
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 6.5e-18 95.5 227 33.5
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 6.5e-18 95.5 238 33.6
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.1e-17 94.7 223 35.4
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 1.4e-17 94.4 243 34.6
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 4.2e-17 92.8 220 38.6
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 9.3e-17 91.7 244 34.4
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.2e-16 91.3 224 36.2
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 2.1e-16 90.5 215 34.9
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 2.7e-16 90.1 243 33.7
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 3.5e-16 89.7 221 33.5
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 7.9e-16 88.6 221 36.7
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 1.3e-15 87.8 220 36.8
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 5.1e-15 85.9 222 33.8
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 6.7e-15 85.5 220 35.9
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 1.5e-14 84.3 217 35.9
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 4.3e-14 82.8 230 36.1
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 5.7e-14 82.4 225 37.8
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 1.3e-13 81.3 214 36.9
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 4.8e-13 79.3 203 35.0
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 4.8e-13 79.3 223 35.0
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.1e-12 76.6 162 37.7
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 3.1e-12 76.6 204 35.8
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 4.1e-12 76.3 224 31.2
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 5.3e-12 75.9 210 34.8
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 6.9e-12 75.5 154 39.0
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 6.9e-12 75.5 215 31.6
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 9.0e-12 75.1 189 35.4
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.5e-11 74.3 192 34.4
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.3e-10 71.2 91 48.4
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 4.2e-09 66.2 221 31.7
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 1.3e-07 61.2 241 29.5
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 1.8e-07 60.8 232 29.7
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 2.3e-07 60.5 219 28.3
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 3.0e-07 60.1 84 40.5
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 5.1e-07 59.3 153 35.9
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 5.1e-07 59.3 223 30.0
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 6.7e-07 58.9 225 32.0
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 8.7e-07 58.5 228 29.4
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 1.1e-06 58.2 228 25.4
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 1.5e-06 57.8 219 31.5
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 1.9e-06 57.4 134 29.9
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 2.5e-06 57.0 235 27.7
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.5e-06 57.0 141 34.0
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 4.3e-06 56.2 229 27.1
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 4.3e-06 56.2 220 29.1
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 5.7e-06 55.8 222 28.8
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 7.4e-06 55.5 244 27.0
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 7.4e-06 55.5 223 29.1
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 9.7e-06 55.1 284 28.2


User provided reference genes

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