Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.1e-110 403.3 207 100.0
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.1e-110 403.3 207 100.0
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.1e-110 403.3 207 100.0
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 1.8e-108 396.0 207 98.1
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 1.8e-108 396.0 207 98.1
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.6e-101 372.9 210 93.3
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.0e-100 368.2 214 89.3
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 3.2e-97 358.6 214 86.9
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.0e-95 353.6 214 85.5
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 3.0e-95 352.1 211 85.3
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.5e-94 349.7 210 86.2
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.6e-91 339.0 206 86.4
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.3e-86 321.6 215 79.5
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.6e-75 285.8 199 74.9
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.0e-74 283.9 187 78.6
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.9e-74 282.3 213 70.9
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.7e-69 266.5 216 66.2
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 9.1e-68 260.8 217 61.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.6e-67 260.0 225 62.7
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 7.7e-67 257.7 235 60.0
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 2.2e-66 256.1 174 73.0
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 2.2e-66 256.1 214 63.6
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 5.0e-66 255.0 211 63.0
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 6.5e-66 254.6 217 63.1
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.1e-65 253.8 223 60.5
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.9e-65 253.1 224 62.5
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 3.2e-65 252.3 214 66.8
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 3.2e-65 252.3 231 59.7
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.5e-65 251.5 220 61.4
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.6e-64 250.0 221 61.5
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 2.7e-64 249.2 219 62.1
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.6e-64 248.8 217 60.4
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 6.1e-64 248.1 168 72.6
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 6.1e-64 248.1 227 58.1
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 8.0e-64 247.7 168 70.8
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.0e-63 247.3 168 73.8
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 6.7e-63 244.6 223 60.1
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.2e-62 243.8 219 59.8
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.5e-62 243.4 216 60.6
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.0e-62 243.0 212 59.4
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.0e-62 243.0 200 62.0
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.6e-62 242.7 202 64.4
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 2.6e-62 242.7 217 60.4
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.6e-62 242.7 219 60.7
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.3e-62 242.3 213 61.5
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 5.7e-62 241.5 165 72.7
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 7.5e-62 241.1 214 65.0
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 7.5e-62 241.1 210 61.4
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 7.5e-62 241.1 191 66.0
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 9.7e-62 240.7 207 60.4
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 9.7e-62 240.7 216 60.6
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 9.7e-62 240.7 168 67.9
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.3e-61 240.4 207 61.8
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.7e-61 240.0 206 62.1
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.7e-61 240.0 213 60.6
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.7e-61 240.0 210 61.0
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.2e-61 239.6 207 59.9
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.2e-61 239.6 199 63.8
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 3.7e-61 238.8 168 67.9
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.2e-61 237.7 213 60.6
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.2e-61 237.7 213 60.6
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 8.2e-61 237.7 205 61.0
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 8.2e-61 237.7 218 59.2
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 8.2e-61 237.7 168 68.5
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.1e-60 237.3 204 66.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-60 237.3 213 60.1
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.4e-60 236.9 168 67.3
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.8e-60 236.5 168 66.7
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.8e-60 236.5 213 60.1
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 2.4e-60 236.1 222 57.7
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 4.1e-60 235.3 219 58.9
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 7.0e-60 234.6 199 62.3
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 9.1e-60 234.2 227 57.3
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.2e-59 233.8 217 56.2
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.2e-59 233.8 193 62.7
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.2e-59 233.8 193 61.7
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.6e-59 233.4 223 57.0
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.7e-59 232.6 207 60.4
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.9e-59 231.5 215 57.7
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 7.7e-59 231.1 209 57.4
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 7.7e-59 231.1 168 69.0
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 7.7e-59 231.1 221 57.9
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.7e-59 231.1 213 59.2
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 1.0e-58 230.7 227 55.1
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.2e-58 229.6 193 60.6
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.2e-58 229.6 174 65.5
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 3.8e-58 228.8 198 58.6
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 8.5e-58 227.6 166 68.1
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 8.5e-58 227.6 208 58.7
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 7.2e-57 224.6 204 57.8
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 2.7e-56 222.6 168 62.5
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 6.8e-55 218.0 165 61.2
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 2.0e-54 216.5 201 57.7
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.6e-54 216.1 213 57.3
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.6e-54 216.1 194 59.8
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 5.7e-54 214.9 168 59.5
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.3e-53 213.8 189 61.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.2e-53 213.0 217 55.8
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.7e-53 212.2 144 72.2
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.8e-53 211.8 164 62.8
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 4.8e-53 211.8 164 62.8
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 4.8e-53 211.8 207 55.1
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.1e-52 210.7 217 51.6
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.4e-52 209.5 203 55.7
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 2.4e-52 209.5 149 65.8
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 4.1e-52 208.8 195 56.9
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 4.1e-52 208.8 182 59.3
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 9.1e-52 207.6 183 62.3
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.2e-51 207.2 201 53.2
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.2e-51 207.2 201 57.7
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.2e-51 207.2 201 57.7
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 2.0e-51 206.5 152 64.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.7e-50 203.4 144 68.8
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.7e-50 203.4 149 65.1
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.9e-50 202.6 174 55.7
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 8.6e-50 201.1 183 57.9
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 1.9e-49 199.9 165 57.6
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.5e-49 199.5 149 66.4
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.2e-49 198.7 157 62.4
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 9.5e-49 197.6 188 54.8
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 3.6e-48 195.7 145 64.1
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.4e-47 193.7 153 62.1
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 2.3e-47 193.0 189 54.5
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 4.0e-47 192.2 149 62.4
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 5.2e-47 191.8 176 56.8
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 6.8e-47 191.4 197 53.3
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 8.9e-47 191.0 141 66.0
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-46 190.7 165 57.6
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.2e-46 190.7 128 72.7
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 2.8e-45 186.0 189 50.3
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.4e-44 183.0 137 63.5
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 9.2e-44 181.0 131 66.4
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.0e-42 177.6 144 64.6
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 2.1e-40 169.9 94 88.3
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.1e-40 169.9 112 72.3
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 5.2e-39 165.2 172 47.7
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 4.4e-38 162.2 162 53.1
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 4.4e-38 162.2 162 53.1
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.4e-36 157.1 164 46.3
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.0e-36 154.8 106 68.9
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 9.2e-36 154.5 131 55.7
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.0e-35 153.3 106 67.9
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 3.5e-35 152.5 170 45.3
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 3.5e-35 152.5 175 45.7
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 3.6e-32 142.5 108 63.0
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 5.8e-30 135.2 160 40.6
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.7e-18 97.1 151 40.4
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 8.1e-16 88.2 192 31.8


User provided reference genes

Program Settings