Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 6.9e-193 677.2 350 100.0
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 1.3e-151 540.0 281 99.3
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 4.3e-102 375.6 354 63.8
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.7e-93 345.5 358 60.1
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.9e-84 315.1 357 56.3
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 6.9e-84 315.1 395 53.7
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 9.0e-84 314.7 357 56.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 4.5e-83 312.4 364 55.2
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 5.8e-83 312.0 364 55.8
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.2e-82 310.1 351 55.6
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.4e-81 306.6 369 53.9
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.6e-72 277.3 406 48.3
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 6.7e-71 271.9 414 46.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.9e-65 253.8 380 47.9
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.1e-65 251.9 418 43.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 6.0e-64 248.8 420 44.8
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 3.8e-58 229.6 132 93.9
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.8e-55 220.7 420 41.9
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.2e-45 187.2 447 37.1
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.6e-40 171.0 344 40.1
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 8.0e-40 168.7 434 36.4
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.1e-38 164.9 146 66.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 7.7e-27 125.6 449 30.1
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 5.5e-25 119.4 474 28.5
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 9.4e-25 118.6 401 29.2
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 6.8e-23 112.5 444 29.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.2e-22 111.7 469 29.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.5e-22 111.3 395 29.1
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.0e-22 110.9 475 26.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-22 110.9 443 28.2
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.6e-22 110.5 475 27.6
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.4e-22 110.2 477 28.9
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.4e-22 110.2 361 30.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.4e-22 109.8 463 27.2
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.5e-22 109.0 477 27.7
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.5e-22 109.0 475 27.2
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 7.5e-22 109.0 451 28.2
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 9.8e-22 108.6 478 27.2
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.7e-21 107.8 466 28.8
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.8e-21 107.1 451 27.9
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.8e-21 106.3 479 28.2
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 3.1e-20 103.6 403 28.3
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 4.1e-20 103.2 477 26.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 5.4e-20 102.8 436 25.9
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.0e-20 102.4 420 27.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.1e-20 102.1 442 28.3
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 9.1e-20 102.1 473 26.4
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.6e-19 101.3 478 25.9
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.0e-19 100.9 478 26.6
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.0e-19 100.9 348 29.3
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 7.7e-19 99.0 400 28.0
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.0e-18 98.6 468 25.6
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.7e-18 97.8 478 27.2
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.3e-18 97.4 479 26.5
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 5.0e-18 96.3 478 27.6
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 5.0e-18 96.3 463 25.7
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 8.6e-18 95.5 419 29.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.3e-17 93.6 377 28.6
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.2e-17 93.2 379 28.0
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 4.2e-17 93.2 417 25.9
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 9.5e-17 92.0 404 25.2
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 9.5e-17 92.0 404 25.2
BolC2t07934H Brassica oleracea HOM05D003640 ORTHO05D004439 9.5e-17 92.0 57 82.5
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 3.6e-16 90.1 343 27.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 4.7e-16 89.7 474 25.9
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 6.1e-16 89.4 403 26.3
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 6.1e-16 89.4 410 25.9
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.4e-15 88.2 409 25.9
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.4e-15 88.2 419 24.8
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.4e-15 88.2 410 26.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.8e-15 87.8 450 26.9
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.8e-15 87.8 387 26.4
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.3e-15 87.4 366 27.6
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 2.3e-15 87.4 446 26.2
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.0e-15 87.0 474 27.2
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.2e-15 86.3 366 28.1
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.2e-15 86.3 475 27.4
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 5.2e-15 86.3 398 26.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 6.8e-15 85.9 443 25.3
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 8.9e-15 85.5 432 25.0
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.5e-14 84.7 399 27.1
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.5e-14 84.7 387 25.6
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.5e-14 84.7 412 26.2
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.6e-14 84.0 469 26.4
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.4e-14 83.6 392 25.5
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.7e-14 82.8 440 24.1
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 3.7e-13 80.1 330 28.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 4.9e-13 79.7 411 23.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 6.3e-13 79.3 441 26.3
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 8.3e-13 79.0 382 28.5
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-12 78.6 388 28.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.1e-12 78.6 366 27.3
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.4e-12 78.2 383 25.6
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.4e-12 78.2 396 28.0
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.8e-12 77.8 368 28.5
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.2e-12 77.0 396 26.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 4.1e-12 76.6 398 26.9
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 7.0e-12 75.9 388 28.4
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 7.0e-12 75.9 464 26.3
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-11 75.1 330 27.6
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.0e-11 74.3 307 29.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 2.7e-11 73.9 217 31.3
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.7e-11 73.9 165 33.3
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.7e-11 73.9 389 28.3
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.7e-11 73.9 443 26.0
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.7e-11 73.9 391 26.9
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.5e-11 73.6 160 41.2
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 5.9e-11 72.8 113 42.5
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-10 72.0 152 33.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-10 71.2 160 40.6
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.7e-10 71.2 393 26.2
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.9e-10 70.5 310 26.5
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.9e-10 70.5 439 24.8
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 5.0e-10 69.7 305 26.2
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 5.0e-10 69.7 471 24.4
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 5.0e-10 69.7 353 26.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 6.6e-10 69.3 140 32.1
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 6.6e-10 69.3 288 27.8
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.6e-10 69.3 366 25.4
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.5e-09 68.2 413 23.7
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 5.6e-09 66.2 90 43.3
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.8e-08 63.9 362 24.9
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.8e-08 63.9 123 35.0
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 4.7e-08 63.2 114 33.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.1e-08 62.8 310 29.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.0e-08 62.4 396 25.0
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.0e-07 62.0 318 24.2
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-07 61.6 433 24.2
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.4e-07 61.6 336 24.4
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.3e-07 60.8 209 25.8
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.1e-07 60.5 393 26.7
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.0e-07 60.1 393 26.5
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.2e-07 59.7 325 28.0
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.8e-07 59.3 183 32.8
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.8e-07 59.3 310 28.4
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.2e-06 58.5 139 28.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 2.0e-06 57.8 302 23.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 3.4e-06 57.0 175 33.7
BolC9t57240H Brassica oleracea HOM05D003640 ORTHO05D106724 7.5e-06 55.8 40 75.0
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 9.8e-06 55.5 171 25.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 9.8e-06 55.5 171 25.1


User provided reference genes

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