Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 5.0e-120 434.5 226 100.0
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-114 415.6 228 96.5
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.4e-114 415.6 228 96.5
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.4e-109 399.8 231 92.2
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 5.8e-108 394.4 231 91.3
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-91 340.1 226 81.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 3.7e-91 338.6 184 96.7
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 6.4e-91 337.8 226 81.9
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 6.2e-78 294.7 225 73.8
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.9e-63 246.5 206 67.5
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 2.4e-61 239.6 235 57.9
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 6.9e-61 238.0 239 56.5
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 9.0e-61 237.7 235 56.6
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 3.4e-60 235.7 239 55.2
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-59 233.8 239 54.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-59 233.8 240 54.6
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.7e-59 233.4 236 55.9
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.2e-59 233.0 240 54.2
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 3.8e-59 232.3 239 54.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 6.5e-59 231.5 238 53.8
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 8.4e-59 231.1 236 55.1
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.1e-58 230.7 233 54.9
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 4.2e-58 228.8 240 54.6
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.6e-57 226.9 223 56.1
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.0e-52 209.9 224 49.6
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 2.9e-51 206.1 235 48.1
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.9e-51 206.1 216 52.8
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.1e-50 204.1 216 51.4
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.9e-50 203.4 216 51.9
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 4.2e-50 202.2 227 47.6
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.2e-49 200.7 227 48.5
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.6e-49 200.3 226 50.0
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.6e-49 200.3 232 47.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.6e-49 200.3 222 48.6
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.1e-49 199.9 226 48.2
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 2.7e-49 199.5 222 45.9
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 3.5e-49 199.1 238 48.3
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 7.9e-49 198.0 223 49.8
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 7.9e-49 198.0 232 47.0
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.0e-48 197.6 234 48.3
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.3e-48 197.2 227 48.9
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 2.3e-48 196.4 219 51.1
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 3.9e-48 195.7 230 48.7
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 5.1e-48 195.3 225 48.0
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.7e-48 194.5 222 49.1
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.1e-47 194.1 218 50.0
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.1e-47 194.1 230 47.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.1e-47 194.1 235 46.8
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.5e-47 193.7 226 46.9
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.5e-47 193.7 222 50.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.9e-47 193.4 233 48.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.5e-47 193.0 234 46.2
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 4.3e-47 192.2 251 46.6
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.3e-47 192.2 229 45.4
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 5.7e-47 191.8 230 47.4
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 5.7e-47 191.8 216 48.6
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 5.7e-47 191.8 223 48.4
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 7.4e-47 191.4 226 46.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 9.7e-47 191.0 222 49.1
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.3e-46 190.7 220 47.7
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.6e-46 190.3 228 46.9
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.2e-46 189.9 235 44.3
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.2e-46 189.9 226 49.6
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 4.8e-46 188.7 239 45.6
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 6.3e-46 188.3 220 47.7
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.4e-45 187.2 220 48.2
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.8e-45 186.8 234 47.4
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.4e-45 186.4 226 48.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 2.4e-45 186.4 240 46.7
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 6.9e-45 184.9 225 46.7
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.2e-44 184.1 227 47.1
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.5e-44 183.7 224 44.6
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 7.7e-44 181.4 226 47.3
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.3e-43 180.6 246 43.9
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.2e-43 179.9 240 43.8
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.9e-43 179.5 227 44.5
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 3.8e-43 179.1 240 43.8
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 8.5e-43 177.9 227 43.6
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 8.5e-43 177.9 225 45.3
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.5e-42 176.4 238 43.3
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 3.2e-42 176.0 247 43.7
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 4.2e-42 175.6 233 44.2
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.1e-41 173.3 252 42.1
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.1e-41 173.3 251 41.8
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.8e-40 170.2 232 42.2
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.8e-40 170.2 250 40.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 8.8e-40 167.9 243 39.9
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.1e-39 167.5 223 43.0
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 2.0e-39 166.8 227 43.2
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 4.3e-39 165.6 241 41.1
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 4.3e-39 165.6 220 45.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 7.4e-39 164.9 237 40.9
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 3.7e-38 162.5 224 44.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 4.1e-37 159.1 224 43.3
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 6.9e-37 158.3 234 43.2
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.5e-36 155.6 238 38.7
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 4.5e-36 155.6 232 38.8
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 5.9e-36 155.2 238 38.7
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.7e-36 154.8 230 39.1
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.7e-35 153.7 199 43.7
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.9e-35 152.9 192 46.4
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 3.2e-34 149.4 240 40.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.2e-33 147.5 242 39.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.7e-33 146.4 226 38.5
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 3.0e-32 142.9 182 43.4
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.0e-32 142.9 342 30.1
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 3.0e-32 142.9 236 38.1
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 9.7e-31 137.9 230 40.9
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 7.7e-28 128.3 226 34.1
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.5e-26 124.0 221 32.1
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 9.7e-23 111.3 138 49.3
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 8.2e-22 108.2 86 72.1
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 5.3e-21 105.5 75 73.3
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-20 103.6 85 57.6
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.5e-20 102.4 219 38.4
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 2.9e-19 99.8 219 29.2
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 9.4e-18 94.7 228 30.3
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.7e-17 92.4 73 69.9
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.3e-16 90.1 133 43.6
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.2e-14 83.6 225 27.6
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 4.8e-14 82.4 245 30.2
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 3.1e-13 79.7 118 43.2
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 3.1e-13 79.7 215 29.3
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 7.0e-13 78.6 174 29.9
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.2e-12 77.8 125 40.0
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 2.5e-10 70.1 162 31.5
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 2.5e-10 70.1 107 40.2
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 4.2e-10 69.3 125 32.8
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 4.2e-10 69.3 137 33.6
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 4.2e-10 69.3 137 33.6
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 9.4e-10 68.2 137 33.6
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 9.4e-10 68.2 137 33.6
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 8.0e-09 65.1 137 32.1
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.2e-07 61.2 96 42.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.0e-07 60.5 70 37.1


User provided reference genes

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