Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 5.9e-95 350.9 184 100.0
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 4.7e-92 341.3 184 97.3
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 8.9e-91 337.0 184 96.7
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-90 335.9 184 96.2
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 7.8e-87 323.9 186 93.5
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 7.8e-87 323.9 186 93.5
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 8.6e-86 320.5 183 92.3
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.5e-85 319.7 183 92.3
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.1e-71 272.7 183 79.8
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.4e-58 228.8 188 67.0
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 9.3e-56 220.7 167 67.1
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.2e-55 220.3 167 65.3
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 3.5e-55 218.8 167 65.3
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 4.6e-55 218.4 167 65.3
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 7.9e-55 217.6 165 66.7
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-54 216.9 167 64.7
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-54 216.5 167 64.1
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 3.0e-54 215.7 167 63.5
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 3.9e-54 215.3 167 64.1
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 6.6e-54 214.5 160 65.6
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.9e-53 213.0 164 64.0
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 5.6e-53 211.5 165 64.8
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 7.3e-53 211.1 167 62.9
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.0e-51 205.3 167 61.7
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.5e-47 192.2 167 54.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.0e-46 190.7 162 58.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.3e-46 189.5 162 57.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 5.1e-46 188.3 178 52.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 8.7e-46 187.6 170 56.5
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 3.3e-45 185.7 160 55.6
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.3e-45 185.3 164 53.7
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.3e-44 183.7 162 56.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.1e-44 183.0 161 53.4
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 2.8e-44 182.6 179 53.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.8e-44 182.6 169 52.7
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.1e-43 180.6 177 54.8
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.4e-43 180.3 179 53.6
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.4e-43 180.3 176 54.0
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.4e-43 179.5 165 53.9
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 2.4e-43 179.5 158 54.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 3.1e-43 179.1 159 55.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 3.1e-43 179.1 178 49.4
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.1e-43 179.1 155 55.5
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 4.0e-43 178.7 160 54.4
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.0e-43 178.7 167 52.1
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 6.9e-43 177.9 185 51.9
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 9.0e-43 177.6 162 56.2
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.2e-42 177.2 175 51.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.2e-42 177.2 183 50.8
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.5e-42 176.8 188 51.1
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 2.0e-42 176.4 180 53.9
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 2.6e-42 176.0 167 52.1
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 2.6e-42 176.0 161 54.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.4e-42 175.6 177 53.7
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 3.4e-42 175.6 189 49.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.4e-42 175.6 194 47.4
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 4.5e-42 175.3 166 52.4
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 4.5e-42 175.3 190 49.5
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 4.5e-42 175.3 164 52.4
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 5.8e-42 174.9 175 50.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 7.6e-42 174.5 169 54.4
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 7.6e-42 174.5 164 52.4
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.3e-41 173.7 157 56.1
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.7e-41 173.3 162 52.5
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.2e-41 172.9 161 54.7
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 2.2e-41 172.9 188 50.0
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 2.9e-41 172.6 158 54.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 2.9e-41 172.6 176 51.7
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 4.9e-41 171.8 192 47.4
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 6.5e-41 171.4 162 53.1
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.1e-40 170.6 160 53.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.4e-40 170.2 181 50.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 2.5e-40 169.5 187 47.6
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.2e-40 169.1 169 52.1
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 9.3e-40 167.5 159 51.6
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 9.3e-40 167.5 184 49.5
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.2e-39 167.2 162 48.8
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.7e-39 166.0 153 53.6
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 3.5e-39 165.6 193 46.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.0e-39 164.9 176 49.4
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 6.0e-39 164.9 161 54.7
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 6.0e-39 164.9 158 51.9
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 7.9e-39 164.5 161 51.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.0e-38 164.1 169 51.5
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.8e-38 163.3 152 52.6
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.8e-38 163.3 159 51.6
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 2.3e-38 162.9 178 48.3
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 3.0e-38 162.5 158 50.6
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 4.3e-37 158.7 160 48.1
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 7.4e-37 157.9 145 52.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 1.6e-36 156.8 150 52.7
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.4e-35 153.7 142 58.5
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.8e-35 153.3 153 50.3
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.6e-34 147.9 168 44.6
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.0e-33 147.5 168 44.0
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.3e-33 147.1 168 44.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 6.5e-33 144.8 151 51.0
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 2.5e-32 142.9 168 43.5
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 4.2e-32 142.1 179 45.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 5.5e-32 141.7 147 49.7
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 9.3e-32 141.0 187 44.9
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 3.5e-31 139.0 111 59.5
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.6e-31 138.7 155 46.5
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 7.9e-31 137.9 130 51.5
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.0e-30 136.0 281 31.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.1e-29 134.0 168 42.3
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.2e-25 119.8 134 46.3
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 9.4e-24 114.4 186 38.7
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.7e-23 112.8 172 34.9
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.3e-22 109.8 147 35.4
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 9.7e-21 104.4 85 57.6
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-20 102.8 68 82.4
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 3.7e-20 102.4 73 75.3
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.2e-18 97.4 75 65.3
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 2.6e-18 96.3 73 71.2
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.6e-18 96.3 162 41.4
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 5.9e-18 95.1 159 31.4
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 7.9e-15 84.7 81 46.9
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.5e-13 80.5 61 60.7
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 2.6e-13 79.7 174 31.0
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 2.8e-12 76.3 162 32.7
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.8e-12 76.3 150 30.7
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 8.2e-12 74.7 137 35.0
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 8.2e-12 74.7 137 35.0
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 1.4e-11 73.9 175 31.4
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-11 73.6 137 35.0
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.8e-11 73.6 137 35.0
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.4e-11 73.2 158 29.7
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 9.1e-11 71.2 125 32.8
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-10 70.5 137 33.6
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.6e-10 70.5 75 54.7
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 3.2e-08 62.8 96 43.8
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.7e-07 59.7 70 35.7
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 8.0e-07 58.2 84 41.7
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 6.7e-06 55.1 46 54.3


User provided reference genes

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