Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.9e-283 978.4 459 100.0
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.0e-280 968.4 459 99.3
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 4.4e-280 967.2 459 99.1
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 5.9e-277 956.8 459 96.9
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 5.0e-276 953.7 452 98.2
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 5.0e-276 953.7 452 98.2
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 4.1e-270 934.1 459 94.3
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 6.1e-266 920.2 455 93.4
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.0e-265 919.5 457 93.0
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 6.8e-265 916.8 453 92.9
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 4.4e-264 914.1 457 93.0
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 9.8e-264 912.9 457 92.3
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 4.7e-250 867.5 457 86.7
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 2.4e-238 828.6 433 86.1
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.9e-235 818.9 452 83.0
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 2.8e-234 815.1 448 81.2
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.4e-233 812.8 448 81.2
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 3.1e-233 811.6 448 80.8
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 3.1e-233 811.6 451 82.7
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 5.8e-232 807.4 438 83.6
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 7.6e-232 807.0 450 81.1
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 9.9e-232 806.6 433 83.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.3e-231 806.2 432 85.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 6.4e-231 803.9 448 81.5
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 8.4e-231 803.5 450 81.6
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 8.4e-231 803.5 448 81.5
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 3.2e-230 801.6 439 82.7
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 4.1e-230 801.2 448 81.5
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 9.2e-230 800.0 432 83.6
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.2e-229 799.7 448 81.0
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.2e-229 799.7 465 78.5
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.7e-229 798.5 452 80.5
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.7e-229 798.5 436 82.3
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 4.6e-229 797.7 452 80.5
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 7.8e-229 797.0 459 83.4
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.0e-228 796.6 432 83.1
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 1.7e-228 795.8 433 82.0
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.7e-228 795.8 439 82.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 3.0e-228 795.0 450 80.7
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 3.0e-228 795.0 452 80.1
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 3.0e-228 795.0 451 79.2
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 3.0e-228 795.0 450 80.4
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 6.6e-228 793.9 441 80.7
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.1e-227 793.1 433 82.2
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.9e-227 792.3 449 80.0
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 2.5e-227 792.0 433 83.1
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.5e-227 792.0 470 78.5
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 2.5e-227 792.0 450 80.4
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 3.3e-227 791.6 448 80.4
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.3e-227 791.6 437 82.2
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 5.6e-227 790.8 448 79.9
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 7.3e-227 790.4 448 80.1
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.1e-226 788.9 437 81.9
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.1e-226 788.9 433 83.1
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 2.8e-226 788.5 434 82.5
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 3.6e-226 788.1 451 80.3
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 6.2e-226 787.3 444 80.2
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.8e-225 785.8 451 79.8
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 2.4e-225 785.4 434 81.8
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 2.4e-225 785.4 447 79.9
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.5e-224 782.7 432 81.9
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.8e-224 780.8 431 81.2
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 7.6e-224 780.4 471 76.0
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 7.6e-224 780.4 437 80.8
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 4.9e-223 777.7 452 77.7
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 1.1e-222 776.5 440 80.0
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.9e-222 775.8 438 80.4
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.9e-222 775.8 432 80.8
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.6e-221 772.7 434 80.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.7e-221 771.9 435 79.3
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.7e-221 771.9 465 76.3
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 3.5e-221 771.5 432 81.5
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 6.0e-221 770.8 448 79.0
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 6.0e-221 770.8 448 79.0
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 7.8e-221 770.4 429 81.8
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 7.8e-221 770.4 441 78.9
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.3e-220 769.6 432 80.3
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.3e-220 768.8 435 79.3
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 6.6e-220 767.3 436 80.7
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 5.6e-219 764.2 469 74.4
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 5.6e-219 764.2 469 74.4
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 4.8e-218 761.1 432 79.9
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 2.0e-216 755.7 440 78.9
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 9.9e-216 753.4 468 75.0
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.4e-214 749.6 441 78.0
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 4.2e-214 748.0 447 78.1
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 8.7e-212 740.3 438 75.3
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.6e-210 736.1 439 76.3
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.7e-207 726.1 384 85.9
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.7e-207 726.1 446 76.2
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 2.9e-207 725.3 492 70.9
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.8e-204 716.1 447 74.7
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 3.3e-203 711.8 378 84.7
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 5.3e-201 704.5 449 72.4
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 1.9e-195 686.0 397 78.8
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.3e-194 683.3 438 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.6e-189 666.4 424 69.8
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.9e-187 659.4 438 68.5
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 3.8e-183 645.2 452 69.2
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.2e-174 615.1 415 69.9
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 3.0e-172 609.0 433 64.7
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.3e-162 577.0 320 80.6
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.1e-161 572.0 311 83.3
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 3.2e-158 562.4 443 61.4
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 5.2e-156 555.1 304 82.2
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 2.0e-152 543.1 376 69.4
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 3.8e-151 538.9 457 58.9
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 7.5e-147 524.6 296 80.4
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 9.2e-129 464.5 276 76.8
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 3.3e-94 349.7 434 50.9
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.1e-79 299.3 196 73.0
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 2.8e-77 293.5 302 56.3
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.3e-71 274.6 159 78.0
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.8e-69 266.2 132 89.4
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.7e-66 257.7 164 69.5
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 3.3e-62 243.4 133 82.7
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 2.8e-61 240.4 237 53.6
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 3.7e-61 240.0 133 81.2
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 2.6e-59 233.8 132 78.8
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-56 224.9 120 85.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 3.2e-49 200.3 249 49.8
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.2e-46 191.8 119 73.9
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 7.5e-46 189.1 114 70.2
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 2.7e-35 154.1 182 50.5
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.8e-30 135.6 100 64.0
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.0e-23 115.5 90 58.9
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 2.2e-21 107.8 61 77.0
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 6.4e-21 106.3 84 59.5
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 2.4e-20 104.4 55 78.2
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.9e-18 97.1 103 47.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.6e-16 91.7 68 63.2
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.7e-10 71.6 54 63.0
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 4.7e-08 63.5 43 65.1


User provided reference genes

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