Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 1.4e-37 159.1 80 100.0
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 4.6e-36 154.1 77 98.7
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 2.3e-35 151.8 77 97.4
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 2.5e-34 148.3 77 94.8
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 2.5e-34 148.3 77 94.8
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 5.3e-32 140.6 77 92.2
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 9.0e-32 139.8 77 92.2
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 9.0e-32 139.8 80 90.0
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 2.6e-31 138.3 77 89.6
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 2.6e-31 138.3 77 90.9
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.0e-30 136.3 77 89.6
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.0e-30 136.3 77 89.6
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 3.8e-30 134.4 77 88.3
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 3.8e-30 134.4 77 88.3
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 9.4e-29 129.8 77 85.7
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 1.2e-28 129.4 71 88.7
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.1e-28 128.6 80 86.2
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 7.9e-28 126.7 80 85.0
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 4.3e-26 120.9 67 89.6
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 7.4e-26 120.2 69 81.2
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 1.4e-24 115.9 67 77.6
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.8e-24 115.5 64 84.4
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.4e-24 115.2 64 82.8
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.4e-24 115.2 64 82.8
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.4e-24 115.2 64 82.8
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 2.4e-24 115.2 69 79.7
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.3e-24 114.0 66 83.3
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 6.9e-24 113.6 64 81.2
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.9e-24 113.6 64 82.8
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 9.1e-24 113.2 64 84.4
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.2e-23 112.8 64 82.8
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.5e-23 112.5 64 82.8
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.5e-23 112.5 64 82.8
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 2.0e-23 112.1 64 79.7
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.0e-23 112.1 70 77.1
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 2.0e-23 112.1 64 79.7
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 2.6e-23 111.7 71 77.5
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 2.6e-23 111.7 78 71.8
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.6e-23 111.7 62 82.3
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 3.4e-23 111.3 71 74.6
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.5e-23 110.9 78 67.9
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 4.5e-23 110.9 70 75.7
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 4.5e-23 110.9 69 76.8
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 4.5e-23 110.9 64 81.2
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 5.9e-23 110.5 64 82.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.3e-22 109.4 64 79.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.3e-22 109.4 64 78.1
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.3e-22 109.4 64 79.7
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 1.7e-22 109.0 70 72.9
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 2.9e-22 108.2 71 74.6
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 3.8e-22 107.8 61 77.0
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.8e-22 107.8 64 78.1
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 3.8e-22 107.8 64 78.1
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 3.8e-22 107.8 65 78.5
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 6.5e-22 107.1 80 67.5
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 8.5e-22 106.7 60 76.7
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 8.5e-22 106.7 65 76.9
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 8.5e-22 106.7 64 76.6
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 8.5e-22 106.7 67 79.1
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.1e-21 106.3 70 74.3
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.1e-21 106.3 58 86.2
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.4e-21 105.9 66 74.2
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.4e-21 105.9 66 74.2
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.4e-21 105.9 66 74.2
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.4e-21 105.9 64 76.6
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 72 66.7
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-21 105.5 60 75.0
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.9e-21 105.5 65 75.4
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.9e-21 105.5 60 75.0
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.5e-21 105.1 64 76.6
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.2e-21 104.8 66 72.7
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 3.2e-21 104.8 64 76.6
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 3.2e-21 104.8 64 76.6
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.2e-21 104.4 68 70.6
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 4.2e-21 104.4 60 75.0
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 4.2e-21 104.4 63 79.4
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 5.5e-21 104.0 64 71.9
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 5.5e-21 104.0 65 75.4
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 7.2e-21 103.6 64 71.9
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 7.2e-21 103.6 63 74.6
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 1.2e-20 102.8 65 73.8
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.7e-20 101.7 64 73.4
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 2.7e-20 101.7 64 73.4
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 3.6e-20 101.3 76 68.4
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 3.6e-20 101.3 60 73.3
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.6e-20 101.3 64 73.4
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 4.7e-20 100.9 62 75.8
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 4.7e-20 100.9 69 68.1
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 4.7e-20 100.9 69 68.1
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 4.7e-20 100.9 72 69.4
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 4.7e-20 100.9 72 69.4
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 7.9e-20 100.1 64 71.9
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 3.0e-19 98.2 71 70.4
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.8e-19 96.7 66 66.7
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.8e-19 96.7 66 66.7
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 8.8e-19 96.7 66 66.7
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 1.1e-18 96.3 66 68.2
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 2.6e-18 95.1 64 67.2
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 2.6e-18 95.1 56 80.4
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 5.7e-18 94.0 64 68.8
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 7.4e-18 93.6 74 58.1
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 7.4e-18 93.6 61 70.5
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 1.7e-17 92.4 62 71.0
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 2.8e-17 91.7 50 82.0
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 2.8e-17 91.7 54 77.8
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 7.0e-16 87.0 64 62.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.0e-15 85.5 53 75.5
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 5.9e-07 57.4 46 58.7
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.7e-06 55.8 58 41.4


User provided reference genes

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