Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 1.8e-90 335.9 165 100.0
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 5.7e-81 304.3 185 84.3
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 5.4e-79 297.7 185 82.7
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 5.4e-79 297.7 185 82.7
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 1.0e-74 283.5 186 79.6
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 8.6e-53 210.7 176 67.6
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 9.9e-41 170.6 105 83.8
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 4.6e-38 161.8 165 58.8
BcaC01g00842 Brassica carinata HOM05D018769 ORTHO05D032469 2.4e-23 112.8 105 62.9
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 5.5e-15 85.1 53 86.8
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 5.5e-15 85.1 53 86.8
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 5.5e-15 85.1 53 86.8
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 9.3e-15 84.3 53 84.9
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 1.2e-14 84.0 46 78.3
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 2.7e-14 82.8 46 76.1
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.7e-14 82.8 53 83.0
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.7e-14 82.8 53 83.0
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 4.6e-14 82.0 53 83.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 4.6e-14 82.0 53 83.0
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 6.0e-14 81.6 45 77.8
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.0e-13 80.9 46 73.9
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 1.3e-13 80.5 46 73.9
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 1.8e-13 80.1 45 75.6
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.0e-13 79.3 53 77.4
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 3.0e-13 79.3 53 77.4
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.0e-13 79.3 53 77.4
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.0e-13 79.3 53 77.4
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 3.0e-13 79.3 53 77.4
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 3.9e-13 79.0 53 79.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.9e-13 79.0 53 77.4
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.1e-13 78.6 53 79.2
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 6.7e-13 78.2 46 71.7
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 8.7e-13 77.8 46 71.7
BolC7t44176H Brassica oleracea HOM05D004687 ORTHO05D016135 8.7e-13 77.8 42 95.2
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 8.7e-13 77.8 46 69.6
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 1.1e-12 77.4 46 69.6
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.5e-12 77.0 53 77.4
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 2.5e-12 76.3 46 67.4
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.5e-12 76.3 53 75.5
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.6e-12 75.1 53 73.6
BolC3t20800H Brassica oleracea HOM05D004687 ORTHO05D016135 7.4e-12 74.7 42 90.5
BolC7t41056H Brassica oleracea HOM05D004224 ORTHO05D006437 1.4e-10 70.5 46 69.6
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.8e-10 70.1 53 71.7
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 2.0e-09 66.6 41 61.0
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 2.0e-09 66.6 41 63.4
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 2.6e-09 66.2 43 60.5
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.6e-09 66.2 43 60.5
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.6e-09 66.2 43 60.5
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 3.4e-09 65.9 43 60.5
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.5e-09 65.5 43 60.5
FAN09G3807 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.5e-09 65.5 43 60.5
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 4.5e-09 65.5 41 61.0
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 4.5e-09 65.5 41 61.0
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 4.5e-09 65.5 40 62.5
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 7.6e-09 64.7 40 65.0
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 7.6e-09 64.7 40 62.5
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 1.0e-08 64.3 40 60.0
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 1.0e-08 64.3 40 60.0
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.0e-08 64.3 40 62.5
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 1.0e-08 64.3 43 55.8
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 1.3e-08 63.9 40 62.5
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 1.3e-08 63.9 43 58.1
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 1.7e-08 63.5 40 60.0
BolC6t36307H Brassica oleracea HOM05D000313 ORTHO05D021935 1.7e-08 63.5 64 50.0
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 1.7e-08 63.5 40 60.0
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 2.2e-08 63.2 40 57.5
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 2.2e-08 63.2 42 57.1
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 2.9e-08 62.8 40 60.0
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 2.9e-08 62.8 43 55.8
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 2.9e-08 62.8 40 60.0
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 3.8e-08 62.4 40 60.0
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 4.9e-08 62.0 40 62.5
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 4.9e-08 62.0 37 64.9
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 4.9e-08 62.0 40 57.5
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 4.9e-08 62.0 40 57.5
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 6.5e-08 61.6 43 55.8
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 6.5e-08 61.6 40 55.0
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 6.5e-08 61.6 66 48.5
BolC2t10414H Brassica oleracea HOM05D004224 ORTHO05D021935 8.4e-08 61.2 64 48.4
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 8.4e-08 61.2 43 53.5
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 8.4e-08 61.2 45 57.8
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 8.4e-08 61.2 40 60.0
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 8.4e-08 61.2 40 62.5
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 1.1e-07 60.8 40 60.0
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 1.1e-07 60.8 40 55.0
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 1.1e-07 60.8 40 57.5
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 1.4e-07 60.5 40 60.0
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 1.4e-07 60.5 40 57.5
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.4e-07 60.5 64 51.6
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 1.4e-07 60.5 40 65.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.9e-07 60.1 66 47.0
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.9e-07 60.1 66 47.0
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 1.9e-07 60.1 41 53.7
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 1.9e-07 60.1 44 54.5
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 1.9e-07 60.1 40 60.0
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 1.9e-07 60.1 40 52.5
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 1.9e-07 60.1 40 57.5
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.9e-07 60.1 66 47.0
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 1.9e-07 60.1 41 56.1
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 2.5e-07 59.7 40 57.5
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.5e-07 59.7 66 48.5
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 2.5e-07 59.7 41 53.7
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 2.5e-07 59.7 40 55.0
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 2.5e-07 59.7 40 55.0
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 3.2e-07 59.3 40 55.0
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 3.2e-07 59.3 40 57.5
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 4.2e-07 58.9 45 51.1
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 4.2e-07 58.9 56 55.4
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 5.5e-07 58.5 57 52.6
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 5.5e-07 58.5 40 52.5
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 5.5e-07 58.5 40 52.5
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 5.5e-07 58.5 41 56.1
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 5.5e-07 58.5 40 60.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 5.5e-07 58.5 52 59.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.1e-07 58.2 66 48.5
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 7.1e-07 58.2 40 57.5
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 7.1e-07 58.2 40 57.5
TPR.G21510 Trifolium pratense HOM05D004224 ORTHO05D006437 7.1e-07 58.2 40 55.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 7.1e-07 58.2 45 66.7
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 9.3e-07 57.8 40 55.0
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 9.3e-07 57.8 57 50.9
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 9.3e-07 57.8 46 45.7
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 9.3e-07 57.8 40 57.5
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 1.2e-06 57.4 40 52.5
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-06 57.4 59 52.5
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 1.2e-06 57.4 40 55.0
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.2e-06 57.4 53 54.7
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.2e-06 57.4 53 54.7
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.6e-06 57.0 66 50.0
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 1.6e-06 57.0 41 53.7
TAR517G0001 Trochodendron aralioides HOM05D004224 ORTHO05D016135 1.6e-06 57.0 40 55.0
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.1e-06 56.6 67 49.3
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 2.1e-06 56.6 66 48.5
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.1e-06 56.6 86 40.7
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 2.7e-06 56.2 53 56.6
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 2.7e-06 56.2 40 57.5
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.7e-06 56.2 66 45.5
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 2.7e-06 56.2 41 51.2
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.5e-06 55.8 59 54.2
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.5e-06 55.8 53 56.6
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 3.5e-06 55.8 66 47.0
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 3.5e-06 55.8 40 50.0
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 3.5e-06 55.8 41 53.7
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 4.6e-06 55.5 53 52.8
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 4.6e-06 55.5 40 50.0
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.6e-06 55.5 66 48.5
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 4.6e-06 55.5 46 47.8
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.6e-06 55.5 53 56.6
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.6e-06 55.5 53 56.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 6.0e-06 55.1 53 54.7
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 6.0e-06 55.1 53 54.7
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 6.0e-06 55.1 57 49.1
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 6.0e-06 55.1 41 70.7
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 6.0e-06 55.1 41 51.2
AUR62035877 Chenopodium quinoa HOM05D004224 ORTHO05D006437 7.9e-06 54.7 39 56.4


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