Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1367.8 690 100.0
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1347.4 696 98.3
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1319.3 696 96.8
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 7.7e-305 1050.0 753 76.8
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 6.0e-257 891.0 735 69.4
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.7e-254 881.3 828 62.7
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.4e-242 841.3 829 61.4
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.1e-221 772.3 828 57.4
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 9.7e-207 724.2 753 58.8
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 5.3e-205 718.4 756 58.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.7e-203 713.4 819 56.2
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 2.5e-202 709.5 818 55.7
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 4.2e-202 708.8 756 58.1
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-198 696.4 753 57.4
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-196 690.6 764 57.1
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.0e-196 689.9 825 54.4
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 3.8e-195 685.6 750 57.2
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-162 576.2 779 50.8
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 7.6e-127 458.8 700 47.9
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-123 448.0 693 48.2
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 7.9e-116 422.2 686 46.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-108 397.9 976 36.7
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 8.2e-105 385.6 957 38.1
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.6e-103 380.6 884 38.9
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.5e-102 375.9 921 38.2
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 4.6e-100 369.8 955 35.8
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 4.6e-100 369.8 967 37.1
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 7.9e-100 369.0 927 36.1
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 6.7e-99 365.9 934 35.8
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.1e-98 365.2 979 37.7
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.7e-94 351.3 964 36.0
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-94 351.3 866 38.9
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 9.4e-93 345.5 849 38.3
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 7.9e-92 342.4 863 38.0
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.5e-90 337.4 915 35.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.5e-90 337.4 915 35.8
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.8e-88 331.3 886 38.3
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 2.9e-86 323.9 975 34.1
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 2.9e-86 323.9 975 34.1
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 6.1e-84 316.2 923 35.6
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 6.1e-84 316.2 935 34.8
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 3.0e-83 313.9 828 36.2
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 9.7e-82 308.9 947 34.0
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-81 308.1 1005 33.2
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 3.1e-80 303.9 937 33.8
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 8.5e-78 295.8 931 33.2
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.4e-72 278.5 843 34.9
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 2.1e-60 238.0 181 72.9
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 4.9e-49 200.3 894 28.5
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.5e-45 188.0 677 29.1
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.5e-45 188.0 454 32.8
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 6.2e-44 183.3 436 33.9
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.4e-43 182.2 411 33.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.4e-43 182.2 480 33.3
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.8e-43 181.8 210 54.3
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.8e-43 181.8 398 34.2
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.2e-42 179.1 790 27.6
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.0e-42 178.3 415 34.5
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 2.6e-42 177.9 435 33.6
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 2.6e-42 177.9 508 32.1
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 3.4e-42 177.6 578 31.0
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 5.8e-42 176.8 814 28.4
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.7e-41 175.3 507 32.5
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.4e-41 173.3 406 34.5
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.4e-41 173.3 507 32.0
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.4e-40 171.4 485 33.2
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.2e-40 171.0 420 34.3
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 9.2e-40 169.5 445 33.0
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.2e-39 169.1 484 31.8
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.0e-39 168.3 462 33.5
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 6.0e-39 166.8 480 32.3
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 7.8e-39 166.4 476 31.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 7.8e-39 166.4 413 33.2
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.0e-38 166.0 403 34.5
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.3e-38 165.6 846 25.8
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.3e-38 165.6 455 30.8
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.3e-38 164.9 463 32.8
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.3e-38 164.9 452 31.4
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.0e-38 164.5 803 28.3
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 3.9e-38 164.1 917 26.2
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 6.6e-38 163.3 480 32.3
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.5e-37 162.2 385 35.8
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.5e-37 162.2 393 33.6
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.5e-37 162.2 409 32.8
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.5e-37 161.4 455 33.2
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 9.5e-37 159.5 344 33.1
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.6e-36 157.5 438 32.0
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 4.7e-36 157.1 380 33.9
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 4.7e-36 157.1 461 33.0
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 4.7e-36 157.1 464 33.4
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 6.2e-36 156.8 468 32.7
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.2e-36 156.8 420 32.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 8.1e-36 156.4 487 30.0
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.4e-35 155.6 409 32.3
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.4e-35 155.6 462 32.5
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.4e-35 155.6 446 32.3
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 3.1e-35 154.5 467 30.8
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.1e-35 154.5 323 34.7
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.2e-35 153.7 366 34.4
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.2e-35 153.7 366 34.4
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 5.2e-35 153.7 455 31.4
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 5.2e-35 153.7 729 27.8
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.2e-34 152.5 467 30.6
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 708 28.2
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.0e-34 151.8 338 36.1
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 366 34.2
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 366 34.2
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.6e-34 151.4 366 34.2
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.6e-34 151.4 324 36.4
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 3.4e-34 151.0 393 32.6
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 4.4e-34 150.6 912 25.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 9.8e-34 149.4 423 31.4
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 9.8e-34 149.4 413 31.7
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 9.8e-34 149.4 425 32.0
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 9.8e-34 149.4 745 27.0
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.3e-33 149.1 428 32.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.3e-33 149.1 428 32.0
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.7e-33 148.7 429 31.2
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 3.7e-33 147.5 358 34.4
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 6.4e-33 146.7 420 32.1
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 6.4e-33 146.7 415 29.9
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 6.4e-33 146.7 386 33.2
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 8.3e-33 146.4 399 31.1
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.4e-32 145.6 782 25.6
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.9e-32 145.2 371 34.2
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.9e-32 145.2 422 31.0
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 4.1e-32 144.1 383 31.6
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 5.4e-32 143.7 353 32.9
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.6e-31 142.1 357 34.5
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.6e-31 142.1 365 32.9
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.1e-31 141.7 469 30.7
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.1e-31 141.7 464 30.4
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.7e-31 141.4 317 35.6
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.5e-31 141.0 330 35.5
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.5e-31 141.0 402 31.1
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 4.6e-31 140.6 493 29.6
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 6.0e-31 140.2 380 32.6
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 6.0e-31 140.2 700 28.1
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.0e-30 139.4 389 31.6
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.3e-30 139.0 504 28.8
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 1.3e-30 139.0 399 32.1
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.0e-30 137.9 429 29.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 3.0e-30 137.9 426 29.6
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.1e-30 137.1 403 31.3
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 6.6e-30 136.7 788 26.6
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.1e-29 136.0 330 32.1
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.5e-29 134.8 229 39.3
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 9.5e-29 132.9 332 31.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 3.6e-28 131.0 450 28.2
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 4.7e-28 130.6 356 33.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.2e-28 130.2 388 30.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.1e-27 129.4 391 30.9
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.8e-27 128.6 396 32.1
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.3e-27 128.3 412 28.9
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.3e-27 128.3 481 27.2
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.0e-27 127.5 349 34.1
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.2e-26 125.9 343 34.1
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 6.4e-25 120.2 547 26.5
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.4e-24 119.0 383 29.8
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 9.6e-21 106.3 192 38.5
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.5e-15 87.8 263 30.4
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.6e-13 80.5 332 28.3
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.3e-13 80.1 229 29.3
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 8.1e-12 76.6 134 35.1
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.0e-11 74.3 206 31.1
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 9.0e-11 73.2 286 25.9
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 2.0e-10 72.0 227 30.0
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.0e-10 72.0 148 36.5
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.4e-10 71.2 245 29.0
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 4.9e-09 67.4 301 23.9
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 6.4e-09 67.0 231 26.4
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 2.4e-08 65.1 213 29.6
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 4.2e-08 64.3 221 29.4
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 5.4e-08 63.9 213 29.1
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 5.4e-08 63.9 284 26.8
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 2.1e-07 62.0 270 24.4
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 2.1e-07 62.0 231 29.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.7e-07 61.6 70 45.7
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 3.5e-07 61.2 194 28.4
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 4.6e-07 60.8 62 56.5
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 1.0e-06 59.7 251 26.7
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.0e-06 59.7 220 23.2
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 1.3e-06 59.3 272 26.8
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.8e-06 58.9 220 25.0
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 1.8e-06 58.9 216 27.8
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 2.3e-06 58.5 196 28.6
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 8.7e-06 56.6 225 26.2
Lalb_Chr06g0164061 Lupinus albus HOM05D011141 ORTHO05D010879 8.7e-06 56.6 181 27.6


User provided reference genes

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