Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 3.2e-21 104.4 61 100.0
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 3.2e-21 104.4 61 100.0
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 3.2e-21 104.4 61 100.0
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 1.3e-19 99.0 61 93.4
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 1.3e-19 99.0 61 93.4
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 8.7e-19 96.3 61 88.5
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.6e-17 92.0 61 83.6
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 8.2e-17 89.7 61 80.3
Carub.0008s1702 Capsella rubella HOM05D004778 ORTHO05D005679 1.4e-16 89.0 61 80.3
BcaB01g04406 Brassica carinata HOM05D004778 ORTHO05D005679 3.1e-16 87.8 61 82.0
BcaC04g20076 Brassica carinata HOM05D004778 ORTHO05D005679 3.1e-16 87.8 61 82.0
C09p48130 Brassica napus HOM05D004778 ORTHO05D005679 3.1e-16 87.8 61 82.0
BolC9t57665H Brassica oleracea HOM05D004778 ORTHO05D005679 3.1e-16 87.8 61 82.0
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 4.1e-16 87.4 61 77.0
A10p13910 Brassica napus HOM05D004778 ORTHO05D005679 5.3e-16 87.0 61 80.3
BraA10t43484Z Brassica rapa HOM05D004778 ORTHO05D005679 5.3e-16 87.0 61 80.3
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 6.9e-16 86.7 61 78.7
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 9.4e-13 76.3 61 75.4
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 2.1e-12 75.1 61 73.8
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 7.9e-12 73.2 61 72.1
PGR102G2573 Punica granatum HOM05D004778 ORTHO05D005679 7.9e-12 73.2 61 63.9
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 1.4e-11 72.4 61 67.2
C07p54800 Brassica napus HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 70.5
A03p56600 Brassica napus HOM05D004778 ORTHO05D005679 3.9e-11 70.9 61 70.5
BolC7t45969H Brassica oleracea HOM05D004778 ORTHO05D005679 5.1e-11 70.5 61 70.5
BcaNung02429 Brassica carinata HOM05D004778 ORTHO05D005679 6.7e-11 70.1 61 68.9
BraA03t14730Z Brassica rapa HOM05D004778 ORTHO05D005679 6.7e-11 70.1 61 70.5
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 8.8e-11 69.7 61 68.9
Thecc.05G250100 Theobroma cacao HOM05D004778 ORTHO05D005679 8.8e-11 69.7 61 67.2
MD03G1004000 Malus domestica HOM05D004778 ORTHO05D005679 2.0e-10 68.6 62 67.7
THA.LOC109116609 Tarenaya hassleriana HOM05D004778 ORTHO05D005679 2.0e-10 68.6 62 67.7
Potri.019G035500 Populus trichocarpa HOM05D004778 ORTHO05D005679 2.6e-10 68.2 61 62.3
BcaC06g32759 Brassica carinata HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
BcaC09g50690 Brassica carinata HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
A01p17570 Brassica napus HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
C01p22170 Brassica napus HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
BolC1t02147H Brassica oleracea HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
BraA01t01710Z Brassica rapa HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 68.9
Nn2g15855 Nelumbo nucifera HOM05D004778 ORTHO05D005679 5.7e-10 67.0 61 65.6
Cfa009564 Carpinus fangiana HOM05D004778 ORTHO05D005679 9.7e-10 66.2 62 66.1
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 1.3e-09 65.9 61 59.0
Gohir.D11G246400 Gossypium hirsutum HOM05D004778 ORTHO05D005679 1.3e-09 65.9 61 60.7
CiPaw.14G136700 Carya illinoinensis HOM05D004778 ORTHO05D005679 2.2e-09 65.1 61 62.3
PSO339G3914 Papaver somniferum HOM05D004778 ORTHO05D005679 2.2e-09 65.1 61 54.1
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 2.8e-09 64.7 61 59.0
Duzib128G0115 Durio zibethinus HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 60.7
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 4.8e-09 63.9 61 59.0
Duzib106G1560 Durio zibethinus HOM05D004778 ORTHO05D005679 6.3e-09 63.5 61 59.0
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 8.2e-09 63.2 61 59.0
Rhsim13G0232700 Rhododendron simsii HOM05D004778 ORTHO05D005679 8.2e-09 63.2 61 55.7
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.1e-08 62.8 62 58.1
Duzib106G0337 Durio zibethinus HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 57.4
Lalb_Chr22g0359101 Lupinus albus HOM05D004778 ORTHO05D005679 1.4e-08 62.4 62 61.3
Prupe.6G003500 Prunus persica HOM05D004778 ORTHO05D005679 1.4e-08 62.4 61 59.0
TWI32G0653 Tripterygium wilfordii HOM05D004778 ORTHO05D005679 1.4e-08 62.4 61 57.4
TAR633G1575 Trochodendron aralioides HOM05D004778 ORTHO05D005679 1.4e-08 62.4 61 60.7
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 1.8e-08 62.0 62 56.5
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 1.8e-08 62.0 62 56.5
Aa31LG8G720 Aethionema arabicum HOM05D004778 ORTHO05D005679 2.4e-08 61.6 54 59.3
PSO384G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 57.4
BcaC01g01515 Brassica carinata HOM05D004778 ORTHO05D005679 4.1e-08 60.8 59 61.0
C03p92630 Brassica napus HOM05D004778 ORTHO05D005679 4.1e-08 60.8 59 61.0
BolC3t21577H Brassica oleracea HOM05D004778 ORTHO05D005679 4.1e-08 60.8 59 61.0
Duzib177G0058 Durio zibethinus HOM05D004778 ORTHO05D005679 4.1e-08 60.8 61 55.7
Potri.003G220900 Populus trichocarpa HOM05D004778 ORTHO05D005679 4.1e-08 60.8 61 59.0
A08p00710 Brassica napus HOM05D004778 ORTHO05D005679 5.3e-08 60.5 59 61.0
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 5.3e-08 60.5 62 54.8
BraA08t32128Z Brassica rapa HOM05D004778 ORTHO05D005679 5.3e-08 60.5 59 61.0
AL3G25430 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 6.9e-08 60.1 61 54.1
Medtr7g085780 Medicago truncatula HOM05D004778 ORTHO05D005679 6.9e-08 60.1 62 59.7
Manes.08G144900 Manihot esculenta HOM05D004778 ORTHO05D005679 9.1e-08 59.7 59 54.2
Potri.013G057500 Populus trichocarpa HOM05D004778 ORTHO05D005679 9.1e-08 59.7 62 58.1
Sp1g41010 Schrenkiella parvula HOM05D004778 ORTHO05D005679 9.1e-08 59.7 62 62.9
PGSC0003DMG400008381 Solanum tuberosum HOM05D004778 ORTHO05D005679 1.2e-07 59.3 61 52.5
BcaB04g16964 Brassica carinata HOM05D004778 ORTHO05D005679 1.5e-07 58.9 59 59.3
BcaC08g43615 Brassica carinata HOM05D004778 ORTHO05D005679 2.0e-07 58.5 62 59.7
C06p10290 Brassica napus HOM05D004778 ORTHO05D005679 2.0e-07 58.5 62 59.7
BolC6t36104H Brassica oleracea HOM05D004778 ORTHO05D005679 2.6e-07 58.2 62 58.1
Hma1.2p1_0589F.1_g184910 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 2.6e-07 58.2 61 57.4
Eucgr.K01501 Eucalyptus grandis HOM05D004778 ORTHO05D005679 3.4e-07 57.8 59 61.0
PGR142G3834 Punica granatum HOM05D004778 ORTHO05D005679 3.4e-07 57.8 62 62.9
Carub.0003s1299 Capsella rubella HOM05D004778 ORTHO05D005679 4.5e-07 57.4 62 53.2
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 4.5e-07 57.4 61 55.7
A05p17520 Brassica napus HOM05D004778 ORTHO05D005679 5.9e-07 57.0 62 58.1
BraA05t20646Z Brassica rapa HOM05D004778 ORTHO05D005679 5.9e-07 57.0 62 58.1
PSO339G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 5.9e-07 57.0 61 54.1
COL.COLO4_36083 Corchorus olitorius HOM05D004778 ORTHO05D005679 7.7e-07 56.6 63 55.6
Gohir.A13G099600 Gossypium hirsutum HOM05D004778 ORTHO05D005679 7.7e-07 56.6 61 54.1
A06p00250 Brassica napus HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 58.1
BraA06t23241Z Brassica rapa HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 58.1
Ca_08272_v3 Cicer arietinum L. HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 54.8
BcaB05g23546 Brassica carinata HOM05D004778 ORTHO05D005679 1.3e-06 55.8 62 53.2
CANSAT78G1478 Cannabis sativa HOM05D004778 ORTHO05D005679 1.3e-06 55.8 61 52.5
PSO339G1550 Papaver somniferum HOM05D004778 ORTHO05D005679 1.3e-06 55.8 61 55.7
PSO339G4337 Papaver somniferum HOM05D004778 ORTHO05D005679 1.3e-06 55.8 61 54.1
PSO384G2791 Papaver somniferum HOM05D004778 ORTHO05D005679 1.3e-06 55.8 61 54.1
Aqoxy1G00473 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 1.7e-06 55.5 61 50.8
BcaB04g20986 Brassica carinata HOM05D004778 ORTHO05D005679 1.7e-06 55.5 63 55.6
BcaC08g44193 Brassica carinata HOM05D004778 ORTHO05D005679 1.7e-06 55.5 62 56.5
C01p51570 Brassica napus HOM05D004778 ORTHO05D005679 1.7e-06 55.5 63 55.6
BolC1t05100H Brassica oleracea HOM05D004778 ORTHO05D005679 1.7e-06 55.5 63 55.6
BolC6t36791H Brassica oleracea HOM05D004778 ORTHO05D005679 1.7e-06 55.5 62 56.5
BraA01t04050Z Brassica rapa HOM05D004778 ORTHO05D005679 2.2e-06 55.1 63 55.6
Nitab4.5_0000394g0080 Nicotiana tabacum HOM05D004778 ORTHO05D005679 2.2e-06 55.1 56 51.8
Sabra19G0043900 Salix brachista HOM05D004778 ORTHO05D005679 2.2e-06 55.1 62 54.8
Sabra19G0047200 Salix brachista HOM05D004778 ORTHO05D005679 2.2e-06 55.1 62 54.8
Medtr6g029260 Medicago truncatula HOM05D004778 ORTHO05D005679 2.9e-06 54.7 62 56.5
Glyma.16G153600 Glycine max HOM05D004778 ORTHO05D005679 3.8e-06 54.3 62 56.5
Migut.K00009 Erythranthe guttata HOM05D004778 ORTHO05D005679 6.5e-06 53.5 59 54.2


User provided reference genes

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