Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 1.1e-140 503.8 375 100.0
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 1.1e-140 503.8 375 100.0
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 1.1e-140 503.8 375 100.0
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 9.8e-121 437.6 379 90.0
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 1.4e-114 417.2 379 87.3
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 9.9e-105 384.4 390 74.1
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 7.1e-103 378.3 405 68.6
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 3.1e-98 362.8 409 63.3
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 3.3e-84 316.2 389 65.0
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 5.1e-77 292.4 391 60.9
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.0e-72 278.1 356 59.0
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 3.8e-72 276.2 356 58.7
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.2e-70 271.2 356 58.7
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 9.7e-68 261.5 355 67.0
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 2.0e-65 253.8 347 61.4
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 7.7e-65 251.9 418 58.4
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 5.7e-60 235.7 347 58.5
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 5.0e-56 222.6 393 57.0
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 3.8e-48 196.4 347 61.1
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 4.0e-45 186.4 413 46.0
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 7.0e-42 175.6 396 38.6
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 5.0e-40 169.5 123 69.9
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.1e-39 168.3 420 43.8
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 3.2e-39 166.8 420 43.6
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 4.7e-38 162.9 402 41.0
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 6.1e-38 162.5 393 42.0
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.8e-37 161.0 398 37.2
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.3e-37 160.6 400 36.8
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.3e-37 160.6 390 38.2
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 5.2e-37 159.5 420 36.7
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 1.2e-36 158.3 387 36.2
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 2.0e-36 157.5 389 41.6
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 7.5e-36 155.6 467 35.8
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 9.8e-36 155.2 371 41.2
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.8e-35 153.7 117 70.9
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 4.8e-35 152.9 128 64.1
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 8.3e-35 152.1 373 39.1
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 8.3e-35 152.1 168 52.4
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 1.8e-34 151.0 345 35.7
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.8e-34 151.0 479 30.9
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.4e-34 150.6 110 70.0
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.1e-34 150.2 115 70.4
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 9.1e-34 148.7 470 36.8
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 2.7e-33 147.1 112 70.5
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 5.9e-33 146.0 484 32.4
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 7.7e-33 145.6 126 62.7
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 7.7e-33 145.6 111 68.5
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 1.0e-32 145.2 111 70.3
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 1.3e-32 144.8 111 68.5
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 2.9e-32 143.7 360 38.3
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 5.0e-32 142.9 113 67.3
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 5.0e-32 142.9 112 68.8
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 6.5e-32 142.5 118 66.1
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 6.5e-32 142.5 127 60.6
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 1.1e-31 141.7 410 39.3
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 1.1e-31 141.7 114 67.5
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.1e-31 141.7 416 32.5
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.5e-31 141.4 402 41.3
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.5e-31 141.4 428 34.6
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.5e-31 141.4 418 33.7
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 3.2e-31 140.2 111 69.4
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.2e-31 139.8 421 32.5
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 4.2e-31 139.8 112 68.8
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 5.5e-31 139.4 377 37.9
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 5.5e-31 139.4 117 64.1
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 5.5e-31 139.4 454 32.2
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 5.5e-31 139.4 112 68.8
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 5.5e-31 139.4 112 68.8
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 7.2e-31 139.0 113 66.4
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 7.2e-31 139.0 115 60.0
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 7.2e-31 139.0 113 67.3
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 7.2e-31 139.0 123 65.0
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 7.2e-31 139.0 488 38.7
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 9.4e-31 138.7 478 32.4
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 9.4e-31 138.7 430 34.2
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 9.4e-31 138.7 126 61.9
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.2e-30 138.3 97 67.0
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.2e-30 138.3 117 66.7
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.2e-30 138.3 451 35.9
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.2e-30 138.3 118 64.4
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.6e-30 137.9 119 61.3
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 2.1e-30 137.5 91 72.5
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.7e-30 137.1 124 61.3
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 2.7e-30 137.1 114 66.7
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 3.6e-30 136.7 366 34.2
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 8.0e-30 135.6 420 39.0
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 8.0e-30 135.6 80 81.2
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 1.0e-29 135.2 166 49.4
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.4e-29 134.8 456 29.4
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 4.0e-29 133.3 118 61.0
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 4.0e-29 133.3 109 64.2
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 4.0e-29 133.3 363 45.5
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 4.0e-29 133.3 101 69.3
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 5.2e-29 132.9 119 59.7
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 5.2e-29 132.9 333 47.4
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 6.8e-29 132.5 398 36.9
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 8.8e-29 132.1 111 64.0
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.2e-28 131.7 101 68.3
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.2e-28 131.7 445 36.6
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 1.2e-28 131.7 392 33.2
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 2.6e-28 130.6 399 39.6
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 3.4e-28 130.2 89 74.2
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 3.4e-28 130.2 412 45.1
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 4.4e-28 129.8 114 60.5
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 9.8e-28 128.6 87 73.6
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 1.7e-27 127.9 105 63.8
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.1e-26 125.2 341 46.0
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 3.1e-26 123.6 110 60.9
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 4.1e-26 123.2 360 48.3
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 5.4e-26 122.9 333 55.6
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 4.5e-25 119.8 124 53.2
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 7.7e-25 119.0 107 58.9
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.7e-24 117.9 118 59.3
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.7e-24 117.9 118 59.3
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 3.8e-24 116.7 333 49.8
BcaC06g35790 Brassica carinata HOM05D018474 ORTHO05D006717 1.1e-23 115.2 312 39.7
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 2.5e-23 114.0 311 39.2
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.2e-22 111.7 564 30.3
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.8e-22 110.5 109 54.1
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 4.7e-22 109.8 486 28.8
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.8e-21 107.8 112 59.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.8e-21 107.8 100 62.0
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-20 104.4 81 65.4
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.9e-19 100.5 60 78.3
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 3.6e-14 83.6 76 57.9
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 8.0e-14 82.4 341 36.4
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 5.8e-12 76.3 52 69.2
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 7.5e-12 75.9 83 60.2
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 3.7e-11 73.6 89 52.8
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 4.9e-11 73.2 45 71.1
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 6.4e-11 72.8 96 52.1
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 8.3e-11 72.4 120 41.7
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.4e-10 71.6 344 29.7
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 7.0e-10 69.3 35 94.3
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 7.0e-10 69.3 35 94.3
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 5.0e-08 63.2 68 57.4
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 9.5e-07 58.9 75 46.7


User provided reference genes

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