Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 1.8e-111 406.0 215 100.0
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 1.8e-111 406.0 215 100.0
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.5e-105 386.3 215 96.3
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 9.7e-105 383.6 216 95.4
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.1e-81 307.0 191 85.3
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 8.3e-72 274.2 183 76.5
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 8.3e-72 274.2 183 76.5
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 5.5e-68 261.5 174 76.4
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.6e-67 258.8 214 68.2
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 8.8e-66 254.2 183 72.7
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 4.9e-64 248.4 204 70.1
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 3.1e-63 245.7 174 73.6
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.7e-62 242.7 133 90.2
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 3.6e-59 232.3 208 68.8
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 1.8e-58 229.9 113 95.6
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.5e-52 210.3 132 77.3
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-47 194.1 113 81.4
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.2e-38 164.1 139 65.5
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 2.6e-33 146.4 195 51.3
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 6.4e-24 115.2 114 55.3
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 2.7e-22 109.8 114 54.4
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.5e-22 109.4 114 54.4
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 2.3e-21 106.7 124 51.6
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 2.3e-21 106.7 135 48.1
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 2.3e-21 106.7 114 53.5
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 3.0e-21 106.3 110 54.5
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 3.9e-21 105.9 114 52.6
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 5.1e-21 105.5 114 52.6
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 5.1e-21 105.5 115 52.2
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 6.6e-21 105.1 114 52.6
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 8.7e-21 104.8 116 53.4
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 2.1e-19 100.1 117 53.0
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.6e-17 93.2 115 49.6
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.7e-16 90.5 116 44.8
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.2e-16 90.1 114 44.7
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 6.4e-16 88.6 99 45.5
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 8.4e-16 88.2 158 40.5
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.4e-15 86.7 113 47.8
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 4.2e-15 85.9 133 40.6
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 7.1e-15 85.1 106 46.2
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 1.6e-14 84.0 103 47.6
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.6e-14 84.0 103 45.6
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 2.1e-14 83.6 108 46.3
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 2.1e-14 83.6 141 41.1
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 3.5e-14 82.8 119 42.0
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 3.5e-14 82.8 139 41.0
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 4.6e-14 82.4 86 46.5
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 4.6e-14 82.4 131 42.0
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 6.0e-14 82.0 68 61.8
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 1.0e-13 81.3 150 43.3
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.0e-13 81.3 87 48.3
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 1.0e-13 81.3 119 43.7
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.3e-13 80.9 129 39.5
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 3.9e-13 79.3 82 53.7
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 5.1e-13 79.0 92 48.9
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 6.7e-13 78.6 111 48.6
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 8.7e-13 78.2 108 42.6
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 8.7e-13 78.2 130 43.8
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.1e-12 77.8 127 42.5
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.5e-12 77.4 123 39.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 1.5e-12 77.4 93 48.4
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.9e-12 77.0 103 43.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 2.5e-12 76.6 99 48.5
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 4.3e-12 75.9 87 47.1
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.3e-11 74.3 122 42.6
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 1.3e-11 74.3 119 42.0
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 2.1e-11 73.6 139 38.8
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.1e-11 73.6 93 49.5
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 2.1e-11 73.6 100 47.0
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 3.6e-11 72.8 86 45.3
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 4.8e-11 72.4 90 45.6
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 4.8e-11 72.4 119 42.0
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 6.2e-11 72.0 152 36.8
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 6.2e-11 72.0 111 43.2
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 8.1e-11 71.6 95 43.2
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 8.1e-11 71.6 99 42.4
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.1e-10 71.2 116 37.9
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.1e-10 71.2 174 34.5
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.4e-10 70.9 75 53.3
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 2.4e-10 70.1 130 43.1
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 4.0e-10 69.3 63 50.8
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 9.0e-10 68.2 132 38.6
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 1.5e-09 67.4 142 34.5
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 2.0e-09 67.0 124 36.3
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 2.6e-09 66.6 80 40.0
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.6e-09 66.6 73 49.3
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 4.5e-09 65.9 95 41.1
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 5.8e-09 65.5 98 38.8
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 9.9e-09 64.7 94 46.8
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 9.9e-09 64.7 98 37.8
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 9.9e-09 64.7 91 42.9
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 1.7e-08 63.9 81 45.7
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 3.8e-08 62.8 102 39.2
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 4.9e-08 62.4 90 42.2
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.4e-08 62.0 155 38.1
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 8.4e-08 61.6 79 44.3
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.4e-07 60.8 122 36.9
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.4e-07 60.8 67 52.2
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.4e-07 60.8 127 37.8
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 1.4e-07 60.8 125 32.0
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.4e-07 60.8 134 37.3
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 1.9e-07 60.5 103 36.9
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 1.9e-07 60.5 97 37.1
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.9e-07 60.5 113 38.9
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 1.9e-07 60.5 91 39.6
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 1.9e-07 60.5 104 39.4
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.4e-07 60.1 89 39.3
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 4.2e-07 59.3 76 44.7
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 4.2e-07 59.3 107 34.6
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 7.1e-07 58.5 122 34.4
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 9.3e-07 58.2 153 32.0
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 9.3e-07 58.2 77 42.9
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 9.3e-07 58.2 101 36.6
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.2e-06 57.8 124 37.1
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 1.2e-06 57.8 120 35.8
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 1.2e-06 57.8 62 53.2
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 1.6e-06 57.4 108 33.3
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.6e-06 57.4 100 40.0
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 1.6e-06 57.4 89 38.2
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 2.1e-06 57.0 63 49.2
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 2.1e-06 57.0 128 32.8
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 2.1e-06 57.0 97 35.1
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 87 37.9
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 2.7e-06 56.6 126 31.7
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.7e-06 56.6 77 40.3
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.5e-06 56.2 142 35.2
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 3.5e-06 56.2 156 31.4
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.5e-06 56.2 73 45.2
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.5e-06 56.2 93 36.6
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 3.5e-06 56.2 93 35.5
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 3.5e-06 56.2 126 35.7
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 3.5e-06 56.2 86 40.7
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.6e-06 55.8 113 38.1
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 4.6e-06 55.8 87 37.9
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 6.0e-06 55.5 83 42.2
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 6.0e-06 55.5 103 35.9
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 6.0e-06 55.5 87 39.1
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.0e-06 55.5 87 39.1
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 6.0e-06 55.5 96 35.4
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.9e-06 55.1 104 36.5
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 7.9e-06 55.1 75 41.3
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 7.9e-06 55.1 75 44.0
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 7.9e-06 55.1 93 38.7


User provided reference genes

Program Settings