Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.3e-79 299.7 158 100.0
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 9.1e-52 207.2 158 74.1
BolC2t07549H Brassica oleracea HOM05D004327 ORTHO05D032179 6.5e-42 174.5 91 100.0
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-26 122.9 146 54.8
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 6.6e-26 121.3 134 57.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-25 120.6 130 58.5
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-25 120.6 130 58.5
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.1e-25 120.6 130 58.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-25 120.6 130 58.5
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.9e-25 119.8 134 56.7
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 5.6e-25 118.2 132 56.8
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.6e-25 118.2 128 57.8
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.8e-24 115.9 128 57.0
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 6.2e-24 114.8 128 55.5
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 5.2e-23 111.7 128 55.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 8.9e-23 110.9 127 53.5
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 3.4e-22 109.0 128 54.7
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.3e-21 107.1 86 73.3
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.3e-17 92.0 128 49.2
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.7e-16 88.6 118 46.6
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 4.7e-16 88.6 137 43.1
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 4.7e-16 88.6 130 46.2
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.7e-16 88.6 116 48.3
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 8.1e-16 87.8 105 52.4
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.1e-15 87.4 105 52.4
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.1e-15 87.4 130 43.8
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.1e-15 87.4 132 43.9
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.8e-15 86.7 103 54.4
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.8e-15 86.7 130 46.2
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.3e-15 86.3 105 51.4
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 3.1e-15 85.9 130 46.2
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 3.1e-15 85.9 130 46.2
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.1e-15 85.9 128 46.9
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 4.0e-15 85.5 130 44.6
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 4.0e-15 85.5 130 45.4
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 4.0e-15 85.5 130 44.6
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 4.0e-15 85.5 116 45.7
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 5.2e-15 85.1 134 44.0
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 5.2e-15 85.1 137 42.3
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 5.2e-15 85.1 126 47.6
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.2e-14 84.0 134 44.8
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.5e-14 83.6 130 44.6
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.5e-14 83.6 127 46.5
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.5e-14 83.6 134 44.8
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.0e-14 83.2 134 44.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 2.6e-14 82.8 128 46.9
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.4e-14 82.4 130 44.6
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.4e-14 82.4 107 50.5
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 3.4e-14 82.4 132 42.4
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 3.4e-14 82.4 99 52.5
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.4e-14 82.0 102 52.9
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 4.4e-14 82.0 128 46.9
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 4.4e-14 82.0 128 45.3
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 4.4e-14 82.0 99 52.5
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.4e-14 82.0 128 46.1
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 7.5e-14 81.3 134 44.0
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 7.5e-14 81.3 128 46.1
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 7.5e-14 81.3 125 44.8
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 9.8e-14 80.9 138 43.5
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 9.8e-14 80.9 194 36.1
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 9.8e-14 80.9 128 43.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.3e-13 80.5 128 43.0
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.3e-13 80.5 134 43.3
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.3e-13 80.5 128 42.2
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.3e-13 80.5 130 44.6
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.7e-13 80.1 104 52.9
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.7e-13 80.1 132 45.5
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.2e-13 79.7 145 41.4
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.9e-13 79.3 130 43.8
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 2.9e-13 79.3 128 44.5
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.9e-13 79.3 99 50.5
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.7e-13 79.0 138 42.8
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.9e-13 78.6 135 40.7
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 4.9e-13 78.6 128 44.5
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 4.9e-13 78.6 109 47.7
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 4.9e-13 78.6 132 44.7
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 4.9e-13 78.6 117 42.7
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 6.4e-13 78.2 135 40.7
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 6.4e-13 78.2 135 40.7
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 6.4e-13 78.2 101 53.5
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 6.4e-13 78.2 71 62.0
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 8.3e-13 77.8 126 42.9
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 8.3e-13 77.8 126 42.9
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 8.3e-13 77.8 101 51.5
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.1e-12 77.4 221 33.5
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.1e-12 77.4 135 40.0
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.1e-12 77.4 132 40.9
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.4e-12 77.0 235 31.9
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.4e-12 77.0 235 31.9
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.4e-12 77.0 235 31.9
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.4e-12 77.0 133 41.4
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 1.9e-12 76.6 136 42.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.9e-12 76.6 127 42.5
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.9e-12 76.6 132 43.9
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.9e-12 76.6 116 43.1
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.4e-12 76.3 134 41.8
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.2e-12 75.9 134 41.8
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 3.2e-12 75.9 132 40.9
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 4.1e-12 75.5 154 39.0
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 4.1e-12 75.5 128 43.8
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 5.4e-12 75.1 134 41.0
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 5.4e-12 75.1 132 40.2
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.1e-12 74.7 130 38.5
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.1e-12 74.7 135 39.3
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 9.2e-12 74.3 128 42.2
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.2e-11 73.9 134 38.1
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.1e-11 73.2 134 42.5
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 2.1e-11 73.2 134 41.8
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 2.1e-11 73.2 134 41.8
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 2.7e-11 72.8 130 42.3
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 4.6e-11 72.0 134 41.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 4.6e-11 72.0 130 42.3
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 4.6e-11 72.0 134 41.0
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.6e-11 72.0 95 45.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 4.6e-11 72.0 119 39.5
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 6.0e-11 71.6 128 41.4
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 6.0e-11 71.6 127 41.7
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.0e-11 71.6 132 37.9
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 7.8e-11 71.2 116 43.1
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 7.8e-11 71.2 101 48.5
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.0e-10 70.9 89 43.8
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 2.3e-10 69.7 100 48.0
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 3.0e-10 69.3 126 38.1
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.1e-10 68.6 114 39.5
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.1e-09 67.4 124 37.9
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.9e-09 66.6 89 48.3
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 3.3e-09 65.9 109 45.0
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.3e-09 65.5 106 43.4
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.8e-08 62.8 132 37.9
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.8e-08 62.8 116 35.3
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-07 59.3 71 49.3
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 3.1e-07 59.3 74 47.3
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.4e-06 55.8 102 39.2


User provided reference genes

Program Settings