Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.2e-66 255.0 131 100.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-65 253.1 131 99.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.3e-64 249.6 129 99.2
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.9e-63 245.7 131 96.2
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.9e-63 245.7 131 96.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.0e-56 223.4 132 90.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.7e-56 222.6 132 90.2
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-56 222.2 132 90.9
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-53 212.2 129 87.6
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.2e-51 205.7 132 86.4
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.5e-49 198.4 132 81.8
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 7.8e-49 197.2 132 84.1
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.3e-48 195.7 132 83.3
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.3e-48 195.7 132 83.3
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.9e-43 178.7 119 79.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.9e-40 168.3 138 70.3
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.8e-38 161.4 123 72.4
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 7.9e-33 144.1 92 85.9
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 7.9e-33 144.1 92 85.9
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 4.6e-25 118.2 123 57.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 2.3e-24 115.9 132 56.1
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 2.3e-24 115.9 124 58.1
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.9e-24 115.2 124 58.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 5.1e-24 114.8 125 55.2
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.5e-23 112.5 125 55.2
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 5.6e-23 111.3 117 54.7
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.4e-23 110.9 127 55.1
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.1e-22 109.4 119 57.1
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.1e-22 109.4 126 54.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.7e-22 108.6 123 56.1
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.2e-22 107.8 123 56.1
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 6.2e-22 107.8 123 56.1
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 8.1e-22 107.5 131 49.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-21 107.1 123 56.1
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.4e-21 106.7 133 50.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 5.3e-21 104.8 121 53.7
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 9.0e-21 104.0 136 50.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-20 103.6 126 54.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.5e-20 103.2 125 55.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.5e-20 103.2 118 52.5
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-20 103.2 130 49.2
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.5e-20 103.2 124 54.8
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.4e-20 102.1 136 51.5
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.4e-20 102.1 123 52.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 4.5e-20 101.7 127 52.0
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.5e-20 101.7 123 52.8
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.5e-20 101.7 113 51.3
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.5e-20 101.7 112 53.6
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.8e-20 101.3 126 50.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.6e-20 100.9 133 48.1
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-19 100.1 127 52.0
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.7e-19 99.8 124 51.6
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.4e-18 96.7 116 46.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.4e-18 96.7 134 48.5
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.4e-18 96.7 130 46.9
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-18 96.3 130 50.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.5e-18 95.9 117 47.9
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.5e-18 95.9 125 52.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 3.2e-18 95.5 130 50.8
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.2e-18 95.5 133 46.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 4.2e-18 95.1 114 50.9
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.3e-18 94.0 135 45.9
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 124 49.2
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-17 93.2 125 50.4
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.6e-17 93.2 130 53.1
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.7e-17 92.4 127 49.6
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.5e-17 92.0 114 51.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 4.6e-17 91.7 136 46.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.0e-17 91.3 123 46.3
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 52.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.3e-16 90.1 111 49.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.3e-16 90.1 133 45.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.8e-16 89.7 117 49.6
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 124 48.4
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.1e-16 88.2 115 47.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 5.1e-16 88.2 133 45.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.7e-16 87.8 113 50.4
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 8.7e-16 87.4 114 48.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 8.7e-16 87.4 132 46.2
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 124 47.6
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.5e-15 85.9 120 50.8
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-15 85.5 124 47.6
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-15 85.5 124 47.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.6e-14 83.2 131 47.3
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.7e-14 82.0 117 46.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.7e-14 82.0 121 44.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 6.3e-14 81.3 142 40.8
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.2e-14 80.9 137 41.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.1e-13 80.5 131 45.8
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.4e-13 80.1 116 44.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-13 80.1 116 39.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-13 79.7 96 53.1
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.4e-13 79.3 129 45.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.4e-13 79.3 126 46.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.4e-13 79.3 126 45.2
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.1e-13 79.0 118 46.6
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.1e-13 79.0 118 45.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.1e-13 79.0 118 45.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 3.1e-13 79.0 119 47.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.1e-13 78.6 111 44.1
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.1e-13 78.6 126 45.2
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 4.1e-13 78.6 110 46.4
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 4.1e-13 78.6 129 48.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.3e-13 78.2 135 40.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 5.3e-13 78.2 87 57.5
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.0e-13 77.4 96 52.1
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 9.0e-13 77.4 114 45.6
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 9.0e-13 77.4 127 40.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 120 42.5
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 128 45.3
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-12 76.6 120 41.7
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.0e-12 76.3 108 46.3
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.6e-12 75.9 119 41.2
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.4e-12 75.5 120 40.8
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.4e-12 75.5 120 40.8
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.5e-12 75.1 111 42.3
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.9e-12 74.7 114 43.9
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.9e-12 74.7 122 41.0
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.9e-12 74.7 120 41.7
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.0e-11 73.9 114 41.2
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.7e-11 73.2 129 35.7
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-11 73.2 120 45.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.9e-11 72.4 128 40.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.8e-11 72.0 128 39.8
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 8.4e-11 70.9 110 40.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 8.4e-11 70.9 137 42.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.4e-10 70.1 108 45.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-10 70.1 149 35.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.9e-10 69.7 154 35.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.9e-10 69.7 132 40.9
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.9e-10 69.7 115 42.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-10 69.7 111 42.3
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.9e-10 69.7 129 47.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.5e-10 69.3 114 43.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.2e-10 68.9 130 39.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.2e-10 68.9 114 38.6
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.2e-10 68.6 110 42.7
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.5e-10 68.2 115 38.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 5.5e-10 68.2 151 35.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.2e-09 67.0 127 41.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.6e-09 66.6 140 34.3
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.1e-09 66.2 128 37.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.6e-09 65.1 117 42.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 6.1e-09 64.7 109 42.2
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.8e-08 63.2 69 53.6
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 5.1e-08 61.6 101 44.6
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.8e-06 55.8 110 37.3
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.7e-06 55.5 166 31.3
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 6.3e-06 54.7 138 32.6
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 6.3e-06 54.7 93 38.7
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 6.3e-06 54.7 161 32.3


User provided reference genes

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