Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 7.4e-195 683.7 352 100.0
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.8e-185 652.5 352 95.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 4.5e-184 647.9 352 94.9
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 4.5e-184 647.9 352 95.5
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 7.7e-176 620.5 352 91.8
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 4.8e-170 601.3 355 87.9
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 8.2e-170 600.5 355 88.5
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.6e-168 595.5 356 87.1
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 3.5e-168 595.1 356 87.1
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 4.5e-168 594.7 356 87.4
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.0e-167 593.6 355 87.0
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.0e-167 593.6 356 86.5
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 2.2e-167 592.4 356 86.8
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.2e-165 586.6 355 86.8
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 8.8e-164 580.5 355 86.2
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 2.6e-163 578.9 355 85.6
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 3.4e-155 552.0 354 81.4
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 6.8e-124 448.0 355 68.2
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.1e-121 438.7 353 67.1
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.4e-113 413.7 353 65.2
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 1.4e-108 397.1 387 59.4
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 6.4e-106 388.3 353 60.9
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.1e-105 387.5 351 61.3
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.2e-105 386.0 351 61.0
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 4.2e-105 385.6 352 60.2
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 4.2e-105 385.6 352 61.9
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 6.0e-104 381.7 351 61.5
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.7e-103 380.2 384 59.4
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.5e-102 377.1 381 57.5
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 2.5e-102 376.3 372 58.6
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 3.3e-102 375.9 376 56.1
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.6e-102 375.2 366 59.0
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 9.6e-102 374.4 345 60.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 1.6e-101 373.6 374 58.0
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 2.1e-101 373.2 371 57.7
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 2.8e-101 372.9 371 59.3
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.8e-101 372.9 382 57.9
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 2.8e-101 372.9 359 60.4
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 3.6e-101 372.5 373 57.4
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 6.2e-101 371.7 376 57.4
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 6.2e-101 371.7 357 59.4
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.1e-100 370.9 367 56.7
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 9.0e-100 367.9 378 56.9
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.2e-99 367.5 332 61.1
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.2e-99 367.5 373 56.8
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.0e-99 366.7 381 57.0
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 2.0e-99 366.7 360 60.0
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 2.6e-99 366.3 369 60.2
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.6e-99 366.3 372 57.8
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 2.6e-99 366.3 381 57.2
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 5.8e-99 365.2 369 60.2
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 5.8e-99 365.2 378 56.6
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 1.7e-98 363.6 376 57.7
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 2.2e-98 363.2 315 62.2
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.8e-98 362.5 389 55.5
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.8e-98 362.5 393 55.7
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.9e-97 360.1 394 55.8
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 4.2e-97 359.0 367 58.3
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 7.1e-97 358.2 385 56.6
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.3e-97 357.8 379 56.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 9.3e-97 357.8 387 54.8
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.6e-96 357.1 351 59.5
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.7e-96 356.3 380 55.0
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.3e-95 354.0 352 58.5
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.8e-95 353.6 382 55.8
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.3e-95 353.2 326 61.3
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 2.3e-95 353.2 389 56.6
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 3.0e-95 352.8 387 56.1
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 3.0e-95 352.8 374 55.1
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 6.7e-95 351.7 309 61.5
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 6.7e-95 351.7 386 54.4
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 8.7e-95 351.3 375 54.7
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.1e-94 350.9 383 55.4
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 3.3e-94 349.4 386 53.4
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 5.6e-94 348.6 388 53.4
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.4e-94 348.2 375 56.3
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 9.6e-94 347.8 386 53.6
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 9.6e-94 347.8 383 55.9
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 1.3e-93 347.4 382 54.5
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 3.7e-93 345.9 386 54.1
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 4.8e-93 345.5 353 56.9
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.2e-93 345.1 374 56.4
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 8.1e-93 344.7 351 57.5
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.4e-92 344.0 306 59.5
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 2.4e-92 343.2 389 52.7
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.9e-92 341.7 371 55.8
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 2.6e-91 339.7 376 52.4
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 2.6e-91 339.7 363 54.0
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 5.8e-91 338.6 376 55.1
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 7.6e-91 338.2 380 54.5
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.0e-90 337.8 371 55.8
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 1.3e-90 337.4 344 56.4
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 3.8e-90 335.9 388 51.5
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 8.4e-90 334.7 353 57.2
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 7.1e-89 331.6 349 56.2
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 3.5e-88 329.3 370 53.8
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 3.9e-87 325.9 374 54.0
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.9e-86 323.6 352 56.5
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 5.7e-86 322.0 369 53.4
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 5.7e-86 322.0 298 58.4
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 3.7e-85 319.3 309 57.9
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 4.1e-84 315.8 368 50.5
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 6.9e-84 315.1 361 52.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 9.0e-84 314.7 393 51.7
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.0e-82 311.2 393 50.6
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 5.5e-81 305.4 276 61.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.2e-80 304.3 292 55.8
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 1.0e-79 301.2 307 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 5.1e-79 298.9 351 49.0
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 1.8e-76 290.4 383 47.3
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 1.5e-75 287.3 347 52.2
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.9e-75 285.4 261 60.9
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 3.6e-72 276.2 318 49.4
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.1e-70 271.2 278 55.8
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 3.0e-63 246.5 260 51.5
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 6.7e-63 245.4 330 49.4
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 6.7e-63 245.4 330 49.4
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.8e-61 239.2 169 68.0
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.6e-59 234.2 357 40.1
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.0e-59 233.8 267 53.2
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.5e-59 232.6 267 52.8
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 3.2e-49 199.9 195 55.4
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.0e-39 168.3 171 58.5
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.3e-39 167.2 193 51.3
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.7e-37 161.0 316 36.4
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 9.8e-30 135.2 163 50.3
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.2e-29 134.0 298 33.2
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 2.7e-27 127.1 83 69.9
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 1.9e-25 120.9 303 33.3
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 3.1e-23 113.6 106 53.8
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 5.8e-22 109.4 144 53.5
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.9e-20 104.4 83 63.9
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 7.0e-20 102.4 139 51.1
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.5e-17 94.7 51 94.1
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.6e-17 92.8 119 42.0
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 3.1e-15 87.0 89 53.9
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 8.6e-10 68.9 278 28.1
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.5e-09 68.2 156 31.4
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 5.6e-09 66.2 41 70.7
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 6.8e-07 59.3 53 54.7
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 2.6e-06 57.4 254 24.0
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 4.4e-06 56.6 80 46.2


User provided reference genes

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