Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 8.8e-176 620.2 308 100.0
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 3.5e-172 608.2 319 96.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 4.2e-170 601.3 319 94.7
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.1e-157 560.1 308 90.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.0e-155 553.5 322 87.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 9.5e-154 547.0 312 86.2
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 9.8e-143 510.4 312 80.4
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 4.9e-142 508.1 321 79.1
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 3.5e-140 501.9 309 79.9
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.7e-139 499.6 322 78.0
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 3.3e-138 495.4 313 77.6
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.6e-132 476.5 298 79.5
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 6.4e-126 454.5 318 69.8
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.6e-105 386.7 305 63.6
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 3.6e-105 385.6 307 62.9
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.8e-104 383.3 308 63.3
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 3.1e-104 382.5 309 62.5
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 3.4e-103 379.0 315 60.6
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.7e-102 376.7 316 61.1
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.7e-102 376.7 320 60.0
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.2e-102 376.3 309 63.4
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.2e-102 376.3 316 60.1
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 4.9e-102 375.2 313 59.7
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 4.9e-102 375.2 304 62.2
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 6.4e-102 374.8 300 62.0
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.4e-101 372.9 312 60.6
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 3.2e-101 372.5 316 59.2
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 6.0e-100 368.2 311 60.5
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.8e-99 366.7 315 58.7
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.0e-99 365.9 304 60.9
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.1e-98 364.0 304 60.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 3.3e-98 362.5 317 59.0
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 5.6e-98 361.7 319 58.6
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.3e-97 360.5 315 59.0
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.8e-96 356.7 307 59.0
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.4e-96 356.3 318 57.2
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.4e-96 356.3 318 57.2
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.1e-96 355.9 310 64.2
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 6.9e-96 354.8 338 56.2
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 9.0e-96 354.4 314 57.0
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 9.0e-96 354.4 314 57.3
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.2e-95 354.0 313 58.1
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.6e-95 352.8 310 58.1
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 7.6e-95 351.3 324 57.1
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.7e-94 350.1 307 58.3
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 1.7e-94 350.1 310 57.4
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.7e-94 350.1 314 55.7
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 4.9e-94 348.6 310 56.8
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 6.4e-94 348.2 313 56.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.1e-93 347.4 366 53.0
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 1.6e-92 343.6 360 52.5
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 2.1e-92 343.2 315 55.9
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 6.0e-92 341.7 306 58.5
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.3e-91 340.5 315 53.7
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 3.0e-91 339.3 298 56.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.4e-90 334.7 301 56.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 7.4e-90 334.7 310 53.5
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 6.2e-89 331.6 286 59.8
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 6.2e-89 331.6 245 66.9
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 8.2e-89 331.3 304 56.6
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 9.0e-88 327.8 255 63.9
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.2e-87 327.4 365 50.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.2e-87 327.4 372 48.9
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.5e-87 327.0 298 57.0
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.6e-87 326.2 305 55.4
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.5e-87 325.5 266 60.9
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 5.8e-87 325.1 302 55.0
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 3.8e-86 322.4 315 54.0
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 4.9e-86 322.0 368 50.0
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 8.4e-86 321.2 341 52.2
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.5e-85 319.7 368 49.7
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.5e-85 319.7 368 49.7
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.5e-85 319.7 275 57.8
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 9.3e-85 317.8 314 54.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 2.1e-84 316.6 278 58.6
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 6.0e-84 315.1 313 54.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.8e-83 313.5 272 58.5
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.1e-82 310.8 314 54.1
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.5e-82 309.7 300 55.7
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.2e-81 306.6 302 54.0
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 2.0e-79 300.1 330 49.1
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 2.6e-79 299.7 315 53.7
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 3.8e-78 295.8 272 54.4
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 6.1e-76 288.5 311 50.5
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 6.1e-76 288.5 311 50.5
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.0e-75 287.7 328 46.3
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.0e-75 286.2 264 55.3
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.1e-72 277.7 309 48.5
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 3.4e-71 272.7 232 59.1
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.5e-71 272.3 299 49.2
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.9e-69 266.9 296 47.6
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.2e-68 264.2 301 48.5
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.6e-68 263.8 190 68.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 6.1e-68 261.9 311 49.8
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 5.1e-67 258.8 219 60.7
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 8.8e-67 258.1 230 59.6
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 8.8e-67 258.1 194 67.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.6e-66 256.5 240 54.6
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.6e-66 256.5 331 43.8
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.3e-65 254.2 225 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.8e-65 253.1 309 46.9
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 8.2e-65 251.5 231 56.7
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.1e-64 251.1 241 54.8
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.8e-64 250.4 300 46.3
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 5.9e-63 245.4 205 60.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.0e-62 244.6 236 53.0
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 5.0e-62 242.3 220 56.8
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.0e-54 218.0 293 41.3
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 3.8e-54 216.1 150 68.0
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.6e-52 209.5 260 46.5
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 4.7e-52 209.1 178 57.9
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 8.8e-51 204.9 311 44.1
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.3e-49 201.1 142 66.9
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.0e-46 191.4 182 56.6
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.5e-42 177.6 131 67.9
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 6.3e-41 172.2 181 52.5
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 9.1e-40 168.3 124 64.5
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 4.7e-36 156.0 220 42.7
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.6e-34 150.2 159 50.9
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.0e-31 140.6 99 64.6
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 5.9e-31 139.0 140 52.9
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 4.1e-24 116.3 88 63.6
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.2e-23 114.8 88 68.2
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 3.5e-23 113.2 75 72.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 7.8e-23 112.1 149 43.0
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.9e-13 80.9 102 44.1
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.0e-10 70.9 66 50.0
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 3.5e-07 60.1 41 68.3
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.7e-06 57.8 88 39.8
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 3.0e-06 57.0 42 66.7
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 3.0e-06 57.0 42 66.7
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 3.0e-06 57.0 42 66.7
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 5.1e-06 56.2 57 49.1


User provided reference genes

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