Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p12920 Brassica napus HOM05D007865 ORTHO05D010123 2.2e-152 542.3 293 100.0
BcaC03g14053 Brassica carinata HOM05D007865 ORTHO05D010123 2.9e-136 488.8 291 90.4
C02p12890 Brassica napus HOM05D007865 ORTHO05D010123 1.4e-135 486.5 295 91.9
BolC2t07384H Brassica oleracea HOM05D007865 ORTHO05D010123 2.5e-135 485.7 291 89.7
BcaC03g14047 Brassica carinata HOM05D007865 ORTHO05D010123 5.5e-135 484.6 291 89.3
BcaC03g14051 Brassica carinata HOM05D007865 ORTHO05D010123 5.1e-133 478.0 291 88.0
BcaC03g14042 Brassica carinata HOM05D007865 ORTHO05D010123 6.7e-133 477.6 291 90.4
C02p12860 Brassica napus HOM05D007865 ORTHO05D010123 3.3e-132 475.3 291 88.3
A02p07380 Brassica napus HOM05D007865 ORTHO05D010123 5.7e-132 474.6 291 86.9
BraA02t05817Z Brassica rapa HOM05D007865 ORTHO05D010123 5.7e-132 474.6 291 86.9
BolC2t07395H Brassica oleracea HOM05D007865 ORTHO05D010123 4.7e-126 454.9 268 91.4
BolC2t07382H Brassica oleracea HOM05D007865 ORTHO05D010123 1.8e-122 443.0 267 91.0
BcaC03g14044 Brassica carinata HOM05D007865 ORTHO05D010123 6.1e-118 427.9 267 86.5
BolC2t07386H Brassica oleracea HOM05D007865 ORTHO05D010123 6.1e-118 427.9 267 86.5
A02p07230 Brassica napus HOM05D007865 ORTHO05D010123 2.6e-116 422.5 265 86.4
A02p07240 Brassica napus HOM05D007865 ORTHO05D010123 5.7e-116 421.4 265 86.4
A02p07250 Brassica napus HOM05D007865 ORTHO05D010123 5.7e-116 421.4 265 86.0
BraA02t05804Z Brassica rapa HOM05D007865 ORTHO05D010123 7.4e-116 421.0 265 86.0
BraA02t05803Z Brassica rapa HOM05D007865 ORTHO05D010123 2.8e-115 419.1 265 85.7
BcaC03g14023 Brassica carinata HOM05D007865 ORTHO05D010123 7.2e-111 404.4 292 78.1
BraA02t05802Z Brassica rapa HOM05D007865 ORTHO05D010123 1.2e-110 403.7 237 90.7
C02p12610 Brassica napus HOM05D007865 ORTHO05D010123 5.5e-103 378.3 228 84.6
BolC2t07397H Brassica oleracea HOM05D007865 ORTHO05D010123 1.5e-95 353.6 212 85.8
BcaB05g22473 Brassica carinata HOM05D007865 ORTHO05D010123 6.1e-94 348.2 308 65.9
BolC2t07361H Brassica oleracea HOM05D007865 ORTHO05D010123 1.2e-92 344.0 203 90.6
BcaB05g22474 Brassica carinata HOM05D007865 ORTHO05D010123 1.1e-87 327.4 323 62.5
C02p12900 Brassica napus HOM05D007865 ORTHO05D010123 1.3e-80 303.9 177 92.7
BcaB05g22471 Brassica carinata HOM05D007865 ORTHO05D010123 7.1e-66 255.0 317 53.0
BcaC03g14024 Brassica carinata HOM05D007865 ORTHO05D010123 4.6e-65 252.3 148 90.5
C02p12910 Brassica napus HOM05D007865 ORTHO05D010123 4.6e-65 252.3 150 92.7
BolC2t07362H Brassica oleracea HOM05D007865 ORTHO05D010123 4.6e-65 252.3 148 90.5
BcaC03g14025 Brassica carinata HOM05D007865 ORTHO05D010123 8.4e-43 178.3 117 80.3
Thhalv10015599m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 5.6e-39 165.6 228 47.8
BcaB01g02171 Brassica carinata HOM05D007865 ORTHO05D010123 5.3e-37 159.1 171 53.8
C09p51140 Brassica napus HOM05D007865 ORTHO05D010123 5.3e-37 159.1 199 49.2
AL4G20480 Arabidopsis lyrata HOM05D014137 ORTHO05D010123 6.9e-37 158.7 159 54.1
AL4G20500 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 6.9e-37 158.7 159 54.1
BcaB08g36307 Brassica carinata HOM05D007865 ORTHO05D010123 6.9e-37 158.7 205 46.8
BolC9t57977H Brassica oleracea HOM05D007865 ORTHO05D010123 2.6e-36 156.8 199 47.7
A10p15310 Brassica napus HOM05D007865 ORTHO05D010123 4.5e-36 156.0 199 48.7
AL8G35160 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 1.0e-35 154.8 170 51.2
A10p15300 Brassica napus HOM05D007865 ORTHO05D010123 6.5e-35 152.1 199 46.2
BraA10t43702Z Brassica rapa HOM05D007865 ORTHO05D010123 6.5e-35 152.1 199 46.2
CARHR273100 Cardamine hirsuta HOM05D007865 ORTHO05D010123 4.2e-34 149.4 229 45.4
Thhalv10015349m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 7.1e-34 148.7 225 44.0
BcaB05g22499 Brassica carinata HOM05D007865 ORTHO05D010123 1.8e-32 144.1 110 70.0
Thhalv10015750m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.1e-31 141.4 176 50.0
AL8G35690 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.1e-30 137.1 141 52.5
C09p51150 Brassica napus HOM05D007865 ORTHO05D010123 4.0e-29 132.9 128 55.5
BolC9t57975H Brassica oleracea HOM05D007865 ORTHO05D010123 2.6e-28 130.2 199 44.2
Carub.0008s1968 Capsella rubella HOM05D007865 ORTHO05D010123 2.6e-28 130.2 157 48.4
Carub.0008s1992 Capsella rubella HOM05D007865 ORTHO05D010123 2.6e-28 130.2 157 48.4
BcaB03g13835 Brassica carinata HOM05D007865 ORTHO05D010123 5.5e-26 122.5 125 56.0
BolC2t07398H Brassica oleracea HOM05D007865 ORTHO05D010123 9.3e-26 121.7 97 77.3
AL8G35420 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.1e-25 120.6 156 42.9
BolC2t07399H Brassica oleracea HOM05D007865 ORTHO05D010123 2.1e-25 120.6 69 85.5
Thhalv10015954m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 7.9e-25 118.6 157 46.5
Thhalv10028345m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.8e-24 117.5 139 49.6
BraA10t43701Z Brassica rapa HOM05D007865 ORTHO05D010123 3.9e-24 116.3 170 45.9
Thhalv10028104m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 3.9e-24 116.3 148 46.6
THA.LOC104813384 Tarenaya hassleriana HOM05D007865 ORTHO05D010123 1.1e-15 88.2 159 31.4
Carub.0006s1626 Capsella rubella HOM05D007865 ORTHO05D010123 2.0e-15 87.4 162 36.4
SpUn1022_0010 Schrenkiella parvula HOM05D007865 ORTHO05D010123 2.8e-14 83.6 56 69.6
Carub.0001s0263 Capsella rubella HOM05D007865 ORTHO05D010513 3.7e-14 83.2 149 36.9
Thhalv10009374m.g Eutrema salsugineum HOM05D009272 ORTHO05D010513 6.3e-14 82.4 156 35.9
AT1G35890 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 2.4e-13 80.5 104 43.3
BcaB02g07852 Brassica carinata HOM05D009350 ORTHO05D010513 5.3e-13 79.3 164 34.1
BcaC04g24060 Brassica carinata HOM05D009056 ORTHO05D011508 5.3e-13 79.3 144 34.0
C09p01500 Brassica napus HOM05D009056 ORTHO05D011508 5.3e-13 79.3 144 34.0
AT3G46565 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 6.9e-13 79.0 89 46.1
AL6G29200 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.0e-12 77.4 163 34.4
CARHR249930 Cardamine hirsuta HOM05D009056 ORTHO05D011508 2.6e-12 77.0 146 35.6
BcaB05g22472 Brassica carinata HOM05D007865 ORTHO05D010123 4.5e-12 76.3 47 76.6
C05p01970 Brassica napus HOM05D009272 ORTHO05D015471 4.5e-12 76.3 159 34.0
C05p02270 Brassica napus HOM05D009272 ORTHO05D015471 4.5e-12 76.3 159 34.0
CiPaw.01G116900 Carya illinoinensis HOM05D007865 ORTHO05D011589 5.9e-12 75.9 164 32.9
AL1G12990 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 7.7e-12 75.5 133 36.1
AL1G13550 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 7.7e-12 75.5 133 36.1
BcaB02g06921 Brassica carinata HOM05D009272 ORTHO05D015471 7.7e-12 75.5 187 31.6
BcaB02g06922 Brassica carinata HOM05D009272 ORTHO05D015471 7.7e-12 75.5 187 31.6
BcaB02g06923 Brassica carinata HOM05D009272 ORTHO05D010123 7.7e-12 75.5 187 31.6
BcaB02g06925 Brassica carinata HOM05D009272 ORTHO05D015471 7.7e-12 75.5 187 31.6
A09p01400 Brassica napus HOM05D009056 ORTHO05D011508 7.7e-12 75.5 141 34.8
BraA09t35804Z Brassica rapa HOM05D009056 ORTHO05D011508 7.7e-12 75.5 141 34.8
BolC9t53085H Brassica oleracea HOM05D009056 ORTHO05D011508 1.3e-11 74.7 145 34.5
THA.LOC104806001 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 1.3e-11 74.7 144 31.2
THA.LOC104806002 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 1.3e-11 74.7 144 31.2
THA.LOC104818129 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 1.7e-11 74.3 144 31.2
BolC5t29005H Brassica oleracea HOM05D009272 ORTHO05D015471 2.2e-11 73.9 159 33.3
BcaB01g02112 Brassica carinata HOM05D009056 ORTHO05D011508 2.9e-11 73.6 142 31.7
BcaC05g24525 Brassica carinata HOM05D009272 ORTHO05D015471 2.9e-11 73.6 159 33.3
BolC5t28976H Brassica oleracea HOM05D009272 ORTHO05D015471 2.9e-11 73.6 159 33.3
BraA10t42475Z Brassica rapa HOM05D009272 ORTHO05D015471 3.8e-11 73.2 180 31.7
A10p02020 Brassica napus HOM05D009272 ORTHO05D015471 5.0e-11 72.8 159 33.3
TAR362G0680 Trochodendron aralioides HOM05D000010 ORTHO05D001550 6.5e-11 72.4 190 34.2
Carub.0001s0160 Capsella rubella HOM05D009350 ORTHO05D010513 8.5e-11 72.0 158 34.8
A10p02460 Brassica napus HOM05D009272 ORTHO05D015471 1.4e-10 71.2 180 31.1
Thhalv10015280m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 1.4e-10 71.2 162 36.4
Sp6g01800 Schrenkiella parvula HOM05D009056 ORTHO05D011508 1.4e-10 71.2 148 34.5
BcaB01g02097 Brassica carinata HOM05D009056 ORTHO05D011508 1.9e-10 70.9 141 32.6
BraA05t20583Z Brassica rapa HOM05D009350 ORTHO05D010513 1.9e-10 70.9 165 32.1
BraA05t20585Z Brassica rapa HOM05D009350 ORTHO05D010513 1.9e-10 70.9 165 32.1
Thhalv10029188m.g Eutrema salsugineum HOM05D009056 ORTHO05D011508 1.9e-10 70.9 125 34.4
C06p16700 Brassica napus HOM05D009350 ORTHO05D010513 2.5e-10 70.5 165 32.1
C09p01340 Brassica napus HOM05D009056 ORTHO05D011508 2.5e-10 70.5 130 33.8
BolC6t36869H Brassica oleracea HOM05D009350 ORTHO05D010513 2.5e-10 70.5 165 32.1
BraA05t20584Z Brassica rapa HOM05D009350 ORTHO05D010513 2.5e-10 70.5 187 31.6
A05p16790 Brassica napus HOM05D009350 ORTHO05D010513 3.2e-10 70.1 184 31.5
A05p16800 Brassica napus HOM05D009350 ORTHO05D010513 3.2e-10 70.1 184 31.5
A05p16820 Brassica napus HOM05D009350 ORTHO05D010513 3.2e-10 70.1 184 31.5
BraA09t35794Z Brassica rapa HOM05D009056 ORTHO05D011508 3.2e-10 70.1 131 35.9
Carub.0006s3546 Capsella rubella HOM05D009056 ORTHO05D011508 3.2e-10 70.1 165 32.1
C06p16790 Brassica napus HOM05D009350 ORTHO05D010513 5.5e-10 69.3 165 32.1
C06p16850 Brassica napus HOM05D009350 ORTHO05D010513 5.5e-10 69.3 187 31.6
BolC6t36877H Brassica oleracea HOM05D009350 ORTHO05D010513 5.5e-10 69.3 165 32.1
BraA05t20590Z Brassica rapa HOM05D009350 ORTHO05D010513 5.5e-10 69.3 202 28.7
BcaC08g44261 Brassica carinata HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
BcaC08g44264 Brassica carinata HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
BcaC08g44265 Brassica carinata HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
BcaC08g44267 Brassica carinata HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
C06p16770 Brassica napus HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
C06p16820 Brassica napus HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
BolC6t36876H Brassica oleracea HOM05D009350 ORTHO05D010513 7.2e-10 68.9 187 31.6
Thhalv10017056m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 7.2e-10 68.9 134 36.6
Thhalv10017700m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 7.2e-10 68.9 134 36.6
Thhalv10017733m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 7.2e-10 68.9 134 36.6
BcaB01g03533 Brassica carinata HOM05D009272 ORTHO05D010513 2.1e-09 67.4 133 30.8
BcaC02g12724 Brassica carinata HOM05D009272 ORTHO05D010513 2.1e-09 67.4 140 34.3
C04p02040 Brassica napus HOM05D009272 ORTHO05D010513 2.1e-09 67.4 140 34.3
BolC4t21854H Brassica oleracea HOM05D009272 ORTHO05D010513 2.1e-09 67.4 140 34.3
BolC4t21858H Brassica oleracea HOM05D009272 ORTHO05D010513 3.6e-09 66.6 140 32.9
BcaC04g24073 Brassica carinata HOM05D009056 ORTHO05D011508 7.9e-09 65.5 127 33.9
A05p01760 Brassica napus HOM05D009272 ORTHO05D010513 7.9e-09 65.5 139 33.1
BraA05t19173Z Brassica rapa HOM05D009272 ORTHO05D010513 7.9e-09 65.5 139 33.1
BcaC02g12720 Brassica carinata HOM05D009272 ORTHO05D010513 1.4e-08 64.7 161 29.2
A09p01390 Brassica napus HOM05D009056 ORTHO05D027233 1.8e-08 64.3 139 32.4
BraA09t35803Z Brassica rapa HOM05D009056 ORTHO05D027233 1.8e-08 64.3 139 32.4
A05p16860 Brassica napus HOM05D009350 ORTHO05D010513 3.9e-08 63.2 156 30.8
A05p16870 Brassica napus HOM05D009350 ORTHO05D010513 3.9e-08 63.2 156 30.8
BolC6t36881H Brassica oleracea HOM05D009350 ORTHO05D010513 6.7e-08 62.4 156 30.8
BcaC05g24482 Brassica carinata HOM05D009272 ORTHO05D010513 8.8e-08 62.0 177 29.9
BraA05t19178Z Brassica rapa HOM05D009272 ORTHO05D010513 1.5e-07 61.2 187 28.9
AT5G18300 Arabidopsis thaliana HOM05D007865 ORTHO05D010123 3.3e-07 60.1 143 34.3
C04p02100 Brassica napus HOM05D009272 ORTHO05D010513 3.3e-07 60.1 130 31.5
BcaB05g22500 Brassica carinata HOM05D007865 ORTHO05D010123 4.4e-07 59.7 93 41.9
A05p01800 Brassica napus HOM05D009272 ORTHO05D010513 4.4e-07 59.7 187 28.3
TAR362G1033 Trochodendron aralioides HOM05D007865 ORTHO05D013286 4.4e-07 59.7 178 32.0
BcaB02g06924 Brassica carinata HOM05D009272 ORTHO05D010513 7.4e-07 58.9 113 35.4
Cpa.g.sc113.19 Carica papaya HOM05D000010 ORTHO05D013286 7.4e-07 58.9 173 32.9
COL.COLO4_15554 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.7e-06 57.8 184 30.4
BcaC08g44266 Brassica carinata HOM05D009350 ORTHO05D010513 2.2e-06 57.4 185 29.2
Thecc.10G077200 Theobroma cacao HOM05D028483 ORTHO05D013286 2.2e-06 57.4 183 32.2
Cpa.g.sc192.19 Carica papaya HOM05D000010 ORTHO05D013286 2.8e-06 57.0 145 34.5
AL6G29530 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 3.7e-06 56.6 146 31.5
AT1G03490 Arabidopsis thaliana HOM05D009272 ORTHO05D010513 3.7e-06 56.6 95 35.8
BolC6t36880H Brassica oleracea HOM05D009350 ORTHO05D010513 3.7e-06 56.6 147 29.9
Sed0023670 Sechium edule HOM05D000010 ORTHO05D050843 4.8e-06 56.2 186 26.3
BcaC04g24061 Brassica carinata HOM05D009056 ORTHO05D027233 6.3e-06 55.8 135 28.9
BolC9t53084H Brassica oleracea HOM05D009056 ORTHO05D027233 6.3e-06 55.8 135 28.9


User provided reference genes

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