Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.6e-159 566.2 321 100.0
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 5.7e-101 371.7 267 85.8
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.9e-97 359.4 305 74.4
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.9e-97 359.4 305 74.4
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 5.5e-96 355.1 305 73.8
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.2e-95 354.0 325 69.2
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 2.3e-94 349.7 265 82.3
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-93 347.4 305 72.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.0e-93 346.7 301 73.4
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 3.3e-93 345.9 305 72.5
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 4.1e-91 339.0 332 67.2
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 5.5e-88 328.6 308 70.1
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.6e-87 325.9 311 68.8
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 4.4e-85 318.9 302 69.2
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.2e-82 310.8 332 63.3
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.9e-81 306.2 339 60.8
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.7e-76 289.3 327 60.2
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.7e-71 273.1 336 54.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 8.0e-71 271.6 336 54.2
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.8e-70 270.4 336 53.9
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 9.8e-69 264.6 326 54.6
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.8e-68 262.3 326 54.3
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.3e-68 261.9 326 54.0
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-68 261.9 326 54.3
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 8.3e-68 261.5 223 76.2
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 8.3e-68 261.5 348 52.3
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.3e-68 261.5 325 54.8
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 2.4e-67 260.0 334 53.6
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 9.1e-67 258.1 324 56.2
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 9.1e-67 258.1 326 53.7
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.2e-66 257.7 348 51.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.2e-66 257.7 336 52.4
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.2e-66 257.7 347 51.6
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.6e-66 257.3 336 51.5
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.6e-66 257.3 336 51.5
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-66 257.3 322 54.0
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.7e-66 256.5 342 51.5
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 3.5e-66 256.1 331 52.3
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.9e-66 255.4 349 50.1
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 5.9e-66 255.4 340 52.4
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 5.9e-66 255.4 335 51.6
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.3e-65 254.2 344 52.3
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.9e-65 253.1 336 50.9
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 2.9e-65 253.1 344 51.5
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 2.9e-65 253.1 344 51.5
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.9e-65 253.1 344 51.5
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.8e-65 252.7 354 51.4
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.6e-65 251.5 260 61.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.5e-64 250.0 334 50.6
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.5e-64 250.0 344 50.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.3e-64 249.6 335 50.1
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.1e-63 246.9 326 52.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 6.1e-63 245.4 332 50.0
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 8.0e-63 245.0 332 50.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 8.0e-63 245.0 340 48.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.0e-62 243.0 335 50.4
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 3.0e-62 243.0 300 53.3
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 3.0e-62 243.0 391 46.5
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.0e-62 243.0 337 49.0
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 3.0e-62 243.0 336 49.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 5.2e-62 242.3 268 57.8
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 8.9e-62 241.5 352 47.4
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.5e-61 240.7 336 49.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.5e-61 240.7 337 49.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.5e-61 240.7 265 57.4
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.0e-61 240.4 338 49.1
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.0e-61 240.4 337 49.9
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.6e-61 240.0 347 48.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 4.4e-61 239.2 349 48.7
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 9.8e-61 238.0 335 48.1
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.3e-60 237.7 346 47.1
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.3e-60 237.7 337 49.6
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.8e-60 236.5 343 48.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.9e-60 235.7 353 47.3
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 4.9e-60 235.7 333 50.5
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.3e-60 235.3 347 48.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.1e-59 234.6 346 48.3
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 4.1e-59 232.6 331 48.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 4.1e-59 232.6 329 49.5
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 9.2e-59 231.5 348 46.6
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.2e-58 231.1 335 49.0
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.0e-58 230.3 336 47.6
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.5e-58 229.2 332 47.3
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.3e-57 226.9 350 46.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 2.9e-57 226.5 344 47.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.9e-57 226.5 260 55.0
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 6.6e-57 225.3 335 47.2
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 8.6e-57 224.9 347 45.2
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-56 223.8 270 55.9
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.9e-56 223.8 350 45.4
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.1e-55 220.3 337 46.0
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.1e-55 220.3 332 47.0
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.0e-54 218.0 351 45.9
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 5.2e-54 215.7 352 44.9
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.5e-53 214.2 328 47.9
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-52 211.1 331 46.5
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.7e-52 210.7 340 45.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.4e-51 207.6 254 53.9
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.9e-51 207.2 335 46.3
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.4e-51 206.8 284 50.4
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.2e-51 206.5 383 43.1
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 7.0e-51 205.3 339 46.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.0e-49 201.4 291 49.5
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.3e-49 201.1 331 45.3
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.6e-47 194.1 344 43.3
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.6e-47 193.0 268 48.9
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 8.0e-47 191.8 277 48.4
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 3.1e-46 189.9 243 53.1
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.0e-46 189.5 274 47.8
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.2e-46 189.1 308 45.5
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.2e-42 177.9 343 42.3
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.2e-39 167.9 247 46.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 8.1e-39 165.2 273 44.7
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 5.6e-32 142.5 334 38.0
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.6e-29 133.7 269 39.8
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.1e-27 125.6 216 42.6
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.3e-27 125.2 131 58.0
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-25 120.9 127 55.9
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.7e-25 120.9 181 47.5
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 4.3e-24 116.3 164 52.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 7.3e-24 115.5 131 52.7
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.3e-23 114.8 174 43.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.8e-23 113.6 142 51.4
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 6.2e-23 112.5 174 47.1
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-21 108.2 101 63.4
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.5e-21 107.8 271 34.7
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 7.6e-21 105.5 282 34.8
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 2.9e-20 103.6 83 77.1
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.4e-19 101.3 281 34.2
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.5e-16 91.3 124 49.2
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.3e-16 90.1 343 28.0
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 9.6e-16 88.6 172 41.3
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.6e-15 87.8 200 39.0
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 5.3e-14 82.8 95 60.0
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 7.9e-10 68.9 44 86.4
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 9.6e-08 62.0 152 36.2
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.3e-07 61.6 54 61.1
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 1.8e-06 57.8 44 68.2


User provided reference genes

Program Settings