Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.1e-128 461.8 242 100.0
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.1e-128 460.3 242 99.6
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.1e-128 460.3 242 99.6
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 3.6e-124 448.4 242 95.5
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-123 446.4 242 95.9
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.9e-113 412.1 239 90.0
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 6.8e-107 391.0 240 83.3
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.3e-101 370.9 240 79.2
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.2e-99 364.8 240 76.7
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.9e-99 364.0 236 77.1
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.7e-89 333.2 239 75.3
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.3e-85 318.5 233 69.5
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.6e-84 316.6 237 67.5
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.8e-84 315.8 223 70.0
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 8.1e-84 314.3 233 68.7
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-83 313.9 233 68.7
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 2.4e-83 312.8 233 68.2
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 2.4e-83 312.8 233 68.2
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 4.0e-83 312.0 224 69.6
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.0e-83 312.0 233 67.8
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 6.9e-83 311.2 237 66.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.5e-82 310.1 234 65.8
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.7e-81 306.6 223 69.5
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.7e-81 306.6 223 69.5
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.2e-81 306.2 223 69.5
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.8e-81 305.4 235 64.7
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.9e-81 305.1 223 69.1
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.9e-81 305.1 235 64.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.2e-80 302.4 235 64.3
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 7.1e-80 301.2 235 63.0
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.1e-80 301.2 234 65.8
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 62.6
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.6e-79 300.1 236 64.0
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.0e-79 298.1 234 63.7
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 7.9e-79 297.7 235 62.1
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 7.9e-79 297.7 235 62.1
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.7e-78 296.6 235 63.4
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.7e-78 296.6 224 65.2
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.7e-78 296.6 230 61.7
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.3e-78 296.2 234 63.7
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 2.3e-78 296.2 233 63.1
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 3.0e-78 295.8 224 65.2
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 3.9e-78 295.4 233 62.7
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.9e-78 295.4 230 63.5
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 5.1e-78 295.0 235 61.7
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 6.6e-78 294.7 233 62.7
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 8.7e-78 294.3 233 63.9
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 8.7e-78 294.3 234 62.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 8.7e-78 294.3 235 62.1
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.1e-77 293.9 236 61.9
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 5.6e-77 291.6 234 60.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 5.6e-77 291.6 233 63.5
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 7.3e-77 291.2 235 61.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 9.6e-77 290.8 259 57.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.3e-76 290.4 218 67.9
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.3e-76 290.4 234 61.1
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.1e-76 289.7 238 61.8
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.8e-76 289.3 234 61.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.6e-76 288.9 235 61.3
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 6.2e-76 288.1 230 62.2
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 6.2e-76 288.1 235 60.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 8.1e-76 287.7 235 61.3
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.1e-75 287.3 235 61.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.4e-75 287.0 235 62.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 4.0e-75 285.4 224 62.9
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 5.3e-75 285.0 234 61.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 6.9e-75 284.6 235 59.6
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.2e-74 283.9 235 61.3
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.5e-74 283.5 235 60.9
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.0e-74 283.1 233 59.7
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.0e-74 283.1 238 56.7
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.6e-74 282.7 271 54.6
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.6e-74 282.7 235 60.0
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 3.4e-74 282.3 224 62.1
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.7e-73 280.0 201 68.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 2.9e-73 279.3 204 67.6
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 6.4e-73 278.1 235 60.4
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.4e-72 276.9 235 59.6
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.4e-72 276.2 230 59.1
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 9.3e-72 274.2 235 60.0
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 2.7e-71 272.7 224 61.6
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.3e-70 269.6 276 52.2
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.9e-70 268.9 230 54.8
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 6.7e-70 268.1 210 64.3
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 8.7e-70 267.7 201 64.7
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 7.4e-69 264.6 235 57.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.6e-68 263.5 229 58.5
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 2.1e-68 263.1 237 59.1
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 2.1e-68 263.1 237 59.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.1e-68 263.1 235 55.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.4e-67 260.4 204 63.2
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.8e-67 260.0 234 59.4
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.8e-67 260.0 209 61.2
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.4e-67 259.6 214 60.7
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 5.8e-66 255.0 236 55.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.2e-65 253.1 197 62.4
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.8e-65 252.3 187 64.7
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 4.9e-65 251.9 235 53.6
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.1e-64 250.8 194 63.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.2e-64 248.8 204 61.8
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.5e-63 245.7 235 51.5
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.6e-63 245.4 221 56.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.9e-63 244.6 235 57.0
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 7.9e-63 244.6 262 51.1
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.0e-62 244.2 227 53.7
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.0e-62 244.2 228 54.8
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.0e-62 244.2 230 55.7
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.3e-62 243.8 204 58.3
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.8e-60 235.3 227 49.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 8.2e-60 234.6 223 51.1
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.3e-59 231.9 166 65.7
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 5.3e-59 231.9 189 63.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.5e-58 230.3 186 59.1
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 7.6e-58 228.0 135 84.4
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.3e-57 227.3 167 65.9
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 2.5e-56 223.0 229 49.3
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.1e-55 219.9 151 74.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.6e-55 218.8 196 58.7
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.1e-53 214.2 166 64.5
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 9.7e-53 211.1 217 50.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 4.8e-52 208.8 224 48.2
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.0e-49 201.1 233 48.1
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.2e-49 199.9 191 56.5
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 3.2e-48 196.1 147 65.3
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.4e-48 194.5 204 52.0
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.1e-47 193.4 151 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 6.3e-44 181.8 173 52.0
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 4.5e-42 175.6 150 68.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.7e-41 173.7 126 66.7
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 9.4e-40 167.9 233 47.2
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.3e-33 147.5 103 68.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.7e-33 147.1 234 39.7
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 5.0e-33 145.6 103 67.0
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 6.5e-33 145.2 104 70.2
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 8.0e-31 138.3 102 64.7
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 4.0e-30 136.0 112 61.6
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 2.6e-29 133.3 109 58.7
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.3e-25 120.9 198 39.4
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.9e-24 117.1 262 33.6
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.2e-24 115.9 234 30.8
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 5.7e-21 105.5 220 33.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 5.7e-21 105.5 220 33.6
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 8.3e-20 101.7 87 56.3
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.5e-16 90.9 96 56.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-15 87.4 54 75.9
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.6e-15 87.4 203 32.5
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.3e-12 77.8 51 70.6
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.4e-11 74.3 71 46.5
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.4e-11 74.3 49 69.4
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 4.1e-11 72.8 51 68.6
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 5.4e-11 72.4 50 76.0
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.6e-10 70.9 79 44.3
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.7e-09 67.4 67 55.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 3.3e-08 63.2 53 56.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 9.5e-08 61.6 48 56.2


User provided reference genes

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