Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 1.0e-61 240.0 124 100.0
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 1.0e-61 240.0 124 100.0
BraA02t05790Z Brassica rapa HOM05D006754 ORTHO05D008403 8.2e-24 114.0 61 93.4
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 1.3e-16 90.1 92 60.9
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 2.2e-16 89.4 92 60.9
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 4.8e-16 88.2 92 59.8
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 8.3e-16 87.4 92 59.8
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 8.3e-16 87.4 92 59.8
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 8.3e-16 87.4 92 59.8
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 8.3e-16 87.4 92 60.9
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 1.8e-15 86.3 92 58.7
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 2.4e-15 85.9 92 59.8
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 3.1e-15 85.5 92 57.6
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 9.1e-15 84.0 92 58.7
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.2e-14 83.6 92 58.7
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 7.7e-14 80.9 92 57.6
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 8.5e-13 77.4 90 55.6
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 1.9e-12 76.3 90 54.4
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 4.2e-12 75.1 92 51.1
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 5.5e-12 74.7 83 61.4
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 5.5e-12 74.7 92 53.3
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 5.5e-12 74.7 92 50.0
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 9.4e-12 73.9 92 51.1
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 9.4e-12 73.9 92 51.1
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 1.2e-11 73.6 92 46.7
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 1.6e-11 73.2 92 46.7
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 1.6e-11 73.2 92 46.7
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 2.1e-11 72.8 91 50.5
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 2.1e-11 72.8 92 47.8
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 3.6e-11 72.0 92 51.1
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 3.6e-11 72.0 92 46.7
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 3.6e-11 72.0 92 46.7
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 3.6e-11 72.0 92 50.0
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 4.7e-11 71.6 92 47.8
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 4.7e-11 71.6 89 49.4
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 6.1e-11 71.2 92 48.9
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 6.1e-11 71.2 92 48.9
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 6.1e-11 71.2 92 47.8
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 6.1e-11 71.2 92 48.9
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 8.0e-11 70.9 92 48.9
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 1.0e-10 70.5 92 45.7
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 1.4e-10 70.1 92 48.9
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 1.4e-10 70.1 90 47.8
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.4e-10 70.1 92 47.8
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 1.4e-10 70.1 92 47.8
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 1.4e-10 70.1 92 47.8
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 1.4e-10 70.1 92 46.7
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 1.8e-10 69.7 92 47.8
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 2.3e-10 69.3 90 50.0
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 2.3e-10 69.3 90 50.0
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 2.3e-10 69.3 92 48.9
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.3e-10 69.3 92 46.7
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 2.3e-10 69.3 92 47.8
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 2.3e-10 69.3 92 48.9
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 3.0e-10 68.9 92 48.9
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 3.0e-10 68.9 92 47.8
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 3.0e-10 68.9 92 45.7
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 3.0e-10 68.9 92 44.6
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 4.0e-10 68.6 92 47.8
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 4.0e-10 68.6 92 46.7
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 4.0e-10 68.6 92 45.7
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 4.0e-10 68.6 92 47.8
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 4.0e-10 68.6 92 47.8
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 4.0e-10 68.6 92 47.8
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 5.2e-10 68.2 92 46.7
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 5.2e-10 68.2 92 48.9
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 5.2e-10 68.2 91 47.3
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 6.8e-10 67.8 92 46.7
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 6.8e-10 67.8 72 51.4
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 1.5e-09 66.6 92 47.8
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 1.5e-09 66.6 92 46.7
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.5e-09 66.6 92 46.7
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 1.5e-09 66.6 91 46.2
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 2.0e-09 66.2 92 44.6
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 2.0e-09 66.2 91 46.2
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 2.0e-09 66.2 74 51.4
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 2.0e-09 66.2 92 46.7
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 2.6e-09 65.9 92 42.4
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 2.6e-09 65.9 92 46.7
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 2.6e-09 65.9 92 46.7
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 2.6e-09 65.9 92 45.7
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 3.4e-09 65.5 92 45.7
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 3.4e-09 65.5 92 44.6
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 5.7e-09 64.7 92 45.7
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 5.7e-09 64.7 92 45.7
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 5.7e-09 64.7 92 45.7
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 5.7e-09 64.7 87 47.1
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 7.5e-09 64.3 77 57.1
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 7.5e-09 64.3 77 57.1
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 7.5e-09 64.3 85 49.4
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 7.5e-09 64.3 92 45.7
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 7.5e-09 64.3 92 43.5
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 9.8e-09 63.9 84 50.0
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 1.7e-08 63.2 92 45.7
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 2.2e-08 62.8 92 44.6
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 2.8e-08 62.4 92 42.4
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.7e-08 62.0 92 40.2
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.7e-08 62.0 92 40.2
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 6.3e-08 61.2 83 49.4
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 1.4e-07 60.1 92 41.3
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 1.2e-06 57.0 92 40.2
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 2.0e-06 56.2 90 43.3


User provided reference genes

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