Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p12190 Brassica napus HOM05D002619 ORTHO05D002804 2.2e-110 402.5 230 100.0
BolC2t07321H Brassica oleracea HOM05D002619 ORTHO05D002804 2.8e-86 322.4 230 83.9
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 4.1e-85 318.5 241 75.9
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 9.4e-82 307.4 240 74.2
BcaC04g19626 Brassica carinata HOM05D002619 ORTHO05D002804 2.1e-81 306.2 240 75.0
BcaB05g22574 Brassica carinata HOM05D002619 ORTHO05D002804 5.2e-80 301.6 230 79.6
Thhalv10014545m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 8.8e-80 300.8 243 78.6
A02p06890 Brassica napus HOM05D002619 ORTHO05D002804 7.5e-79 297.7 233 79.0
BraA10t43782Z Brassica rapa HOM05D002619 ORTHO05D002804 1.3e-78 297.0 240 79.2
BraA02t05769Z Brassica rapa HOM05D002619 ORTHO05D002804 4.8e-78 295.0 233 78.5
CARHR273340 Cardamine hirsuta HOM05D002619 ORTHO05D002804 7.0e-77 291.2 237 79.7
BcaB08g36223 Brassica carinata HOM05D002619 ORTHO05D002804 2.5e-74 282.7 242 75.6
A10p16980 Brassica napus HOM05D002619 ORTHO05D002804 2.1e-73 279.6 240 75.4
AT5G59760 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 4.7e-73 278.5 235 77.0
Carub.0008s2042 Capsella rubella HOM05D002619 ORTHO05D002804 2.2e-70 269.6 220 79.5
AL8G36280 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 3.7e-70 268.9 232 76.7
Aa31sc23G210 Aethionema arabicum HOM05D002619 ORTHO05D002804 1.3e-54 217.2 231 66.7
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 7.3e-42 174.9 230 50.9
BcaB02g10192 Brassica carinata HOM05D002619 ORTHO05D002804 9.9e-23 111.3 239 45.6
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 2.9e-22 109.8 222 47.3
Carub.0004s0969 Capsella rubella HOM05D002619 ORTHO05D002804 3.8e-22 109.4 242 43.8
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 6.4e-22 108.6 232 45.3
C04p22400 Brassica napus HOM05D002619 ORTHO05D002804 1.1e-21 107.8 239 44.8
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 1.4e-21 107.5 240 45.0
BolC4t23756H Brassica oleracea HOM05D002619 ORTHO05D002804 3.2e-21 106.3 239 44.4
A07p19190 Brassica napus HOM05D002619 ORTHO05D002804 9.3e-21 104.8 239 45.2
BraA07t29626Z Brassica rapa HOM05D002619 ORTHO05D002804 2.1e-20 103.6 240 44.6
Sp4g11560 Schrenkiella parvula HOM05D002619 ORTHO05D002804 6.0e-20 102.1 239 45.2
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 1.7e-19 100.5 245 42.9
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 5.1e-19 99.0 211 40.8
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 2.5e-18 96.7 269 40.5
BcaC02g10992 Brassica carinata HOM05D002619 ORTHO05D002804 9.6e-18 94.7 230 43.9
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 9.6e-18 94.7 244 41.4
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 3.6e-17 92.8 235 41.7
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 4.8e-17 92.4 184 48.9
THA.LOC104826341 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 1.8e-16 90.5 270 34.1
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 4.0e-16 89.4 260 38.8
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 4.5e-15 85.9 284 35.9
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 4.5e-15 85.9 253 37.9
BcaB01g03117 Brassica carinata HOM05D002619 ORTHO05D002804 5.8e-15 85.5 208 42.3
BcaNung06778 Brassica carinata HOM05D002619 ORTHO05D002804 5.8e-15 85.5 208 42.3
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 5.8e-15 85.5 184 37.0
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 1.3e-14 84.3 312 34.6
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.7e-14 84.0 252 36.5
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 1.7e-14 84.0 252 38.5
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 2.2e-14 83.6 249 39.4
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 2.2e-14 83.6 275 36.7
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 3.8e-14 82.8 257 37.4
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 3.8e-14 82.8 226 40.3
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 4.9e-14 82.4 259 33.6
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 4.9e-14 82.4 249 37.8
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 4.9e-14 82.4 235 37.9
Aa31LG5G7520 Aethionema arabicum HOM05D002619 ORTHO05D002804 1.1e-13 81.3 190 42.1
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.1e-13 81.3 280 30.7
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 1.9e-13 80.5 227 38.8
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 2.4e-13 80.1 236 37.7
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.2e-13 79.3 237 33.3
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 4.2e-13 79.3 267 38.2
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 5.4e-13 79.0 233 39.5
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 5.4e-13 79.0 244 36.9
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.1e-13 78.6 234 35.0
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 9.3e-13 78.2 249 32.1
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 9.3e-13 78.2 217 34.6
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 1.6e-12 77.4 266 35.3
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 1.6e-12 77.4 239 39.3
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 2.1e-12 77.0 234 38.0
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 2.1e-12 77.0 234 39.7
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 2.7e-12 76.6 239 36.0
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 2.7e-12 76.6 225 33.3
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 3.5e-12 76.3 253 33.2
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 4.6e-12 75.9 277 34.7
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 4.6e-12 75.9 287 32.1
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 4.6e-12 75.9 235 39.1
arahy.Tifrunner.gnm1.ann1.S371Q2 Arachis hypogaea HOM05D002619 ORTHO05D002804 6.0e-12 75.5 250 34.8
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 6.0e-12 75.5 199 39.2
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 6.0e-12 75.5 252 36.1
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.9e-12 75.1 247 34.8
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 7.9e-12 75.1 325 32.9
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 7.9e-12 75.1 183 38.8
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.3e-11 74.3 219 34.2
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.3e-11 74.3 254 31.9
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 2.3e-11 73.6 223 37.2
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 3.0e-11 73.2 241 37.3
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 3.0e-11 73.2 276 29.7
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 3.0e-11 73.2 245 35.5
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 3.0e-11 73.2 197 37.6
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 3.9e-11 72.8 234 37.6
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 3.9e-11 72.8 237 35.4
Lj1A161T60 Lonicera japonica HOM05D002619 ORTHO05D002804 8.7e-11 71.6 191 36.6
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.9e-10 70.5 212 31.6
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 1.9e-10 70.5 254 36.2
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.9e-10 70.5 218 37.6
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 3.3e-10 69.7 269 35.3
arahy.Tifrunner.gnm1.ann1.6E5JYA Arachis hypogaea HOM05D002619 ORTHO05D002804 4.3e-10 69.3 260 33.8
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 9.6e-10 68.2 260 33.8
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 9.6e-10 68.2 218 34.9
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 1.3e-09 67.8 226 36.3
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 1.3e-09 67.8 227 30.8
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.6e-09 67.4 169 38.5
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 1.6e-09 67.4 229 33.2
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 2.1e-09 67.0 261 33.3
MBI05_g38495_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 2.1e-09 67.0 263 33.8
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 2.8e-09 66.6 234 29.1
Hund18942 Selenicereus undatus HOM05D002619 ORTHO05D002804 3.7e-09 66.2 235 29.4
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 4.8e-09 65.9 244 30.3
CDE09G0663 Ceratophyllum demersum HOM05D002619 ORTHO05D002920 8.1e-09 65.1 180 42.2
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 8.1e-09 65.1 217 37.3
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 1.1e-08 64.7 248 36.7
HanXRQChr01g0009911 Helianthus annuus HOM05D002619 ORTHO05D002804 1.4e-08 64.3 217 31.3
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 1.4e-08 64.3 265 32.8
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 1.8e-08 63.9 222 37.8
Gohir.D07G099900 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.8e-08 63.9 172 35.5
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.8e-08 63.9 252 33.7
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 1.8e-08 63.9 265 32.5
PGSC0003DMG400015562 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.8e-08 63.9 174 36.8
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 2.4e-08 63.5 254 35.0
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 2.4e-08 63.5 221 35.3
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 2.4e-08 63.5 199 34.2
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 2.4e-08 63.5 234 32.9
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 3.1e-08 63.2 215 38.1
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 3.1e-08 63.2 208 36.5
Hund05001 Selenicereus undatus HOM05D002619 ORTHO05D002804 3.1e-08 63.2 270 29.3
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 4.0e-08 62.8 207 32.9
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.5e-07 60.8 222 37.4
Aqoxy4G03023 Aquilegia oxysepala HOM05D002619 ORTHO05D002804 2.6e-07 60.1 287 29.3
SalBow2G0511 Salvia bowleyana HOM05D002619 ORTHO05D002804 2.6e-07 60.1 213 37.6
MD03G1100400 Malus domestica HOM05D002619 ORTHO05D002804 4.5e-07 59.3 319 30.4
Rhsim01G0224500 Rhododendron simsii HOM05D002619 ORTHO05D002804 4.5e-07 59.3 195 41.5
TAR633G1544 Trochodendron aralioides HOM05D002619 ORTHO05D002804 4.5e-07 59.3 248 33.9
Ah.08g214850 Amaranthus hybridus HOM05D002619 ORTHO05D002804 5.8e-07 58.9 200 32.5
Haze_24026 Corylus avellana HOM05D002619 ORTHO05D002804 5.8e-07 58.9 283 32.9
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 5.8e-07 58.9 261 30.3
SalBow1G2722 Salvia bowleyana HOM05D002619 ORTHO05D002804 5.8e-07 58.9 210 31.0
SalBow3G1374 Salvia bowleyana HOM05D002619 ORTHO05D002804 5.8e-07 58.9 210 31.0
HanXRQChr08g0228281 Helianthus annuus HOM05D002619 ORTHO05D002804 7.6e-07 58.5 191 31.9
HPP92_012580 Vanilla planifolia HOM05D002619 ORTHO05D002804 7.6e-07 58.5 223 28.3
TWI59G0134 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.0e-06 58.2 214 33.2
TAR369G0856 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.0e-06 58.2 291 32.6
Ciclev10029033m.g Citrus clementina HOM05D002619 ORTHO05D002804 1.3e-06 57.8 229 36.2
TPR.G34317 Trifolium pratense HOM05D002619 ORTHO05D002804 1.3e-06 57.8 225 31.1
Sc12g0001720 Simmondsia chinensis HOM05D002619 ORTHO05D002804 1.7e-06 57.4 254 31.5
SGA_v2.0_scaffold134G34714 Striga asiatica HOM05D002619 ORTHO05D002804 2.2e-06 57.0 197 27.9
Sc21g0005450 Simmondsia chinensis HOM05D002619 ORTHO05D002804 4.9e-06 55.8 185 30.3
Cc01_g04170 Coffea canephora HOM05D002619 ORTHO05D002804 6.4e-06 55.5 242 30.2
Gohir.A03G038401 Gossypium hirsutum HOM05D002619 ORTHO05D002804 6.4e-06 55.5 67 44.8
Sopen11g030810 Solanum pennellii HOM05D002619 ORTHO05D002804 8.4e-06 55.1 227 29.5


User provided reference genes

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