Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 9.9e-34 147.5 182 100.0
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 4.9e-33 145.2 182 95.1
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 4.9e-33 145.2 182 95.1
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 1.2e-28 130.6 77 96.1
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 4.3e-21 105.5 79 81.0
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 1.5e-18 97.1 66 81.8
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 3.4e-18 95.9 79 69.6
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 9.9e-18 94.4 66 78.8
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 1.3e-17 94.0 66 78.8
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 3.8e-17 92.4 66 78.8
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.4e-16 90.5 64 79.7
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 4.2e-16 89.0 68 75.0
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 7.1e-16 88.2 64 78.1
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 9.3e-16 87.8 64 76.6
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 3.9e-14 82.4 64 71.9
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 5.1e-14 82.0 77 63.6
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 2.5e-13 79.7 76 57.9
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 1.6e-12 77.0 59 67.8
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 1.6e-12 77.0 76 52.6
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 2.8e-12 76.3 65 64.6
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 4.8e-12 75.5 64 67.2
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 8.1e-12 74.7 75 56.0
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 1.4e-11 73.9 62 61.3
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 1.4e-11 73.9 77 51.9
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.4e-11 73.9 74 55.4
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 5.3e-11 72.0 73 60.3
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 6.9e-11 71.6 75 54.7
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 1.5e-10 70.5 59 66.1
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 2.0e-10 70.1 67 53.7
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 3.4e-10 69.3 77 48.1
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 4.5e-10 68.9 67 55.2
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 5.8e-10 68.6 74 52.7
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 5.8e-10 68.6 67 55.2
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 5.8e-10 68.6 77 51.9
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 5.8e-10 68.6 59 59.3
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 7.6e-10 68.2 59 59.3
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 9.9e-10 67.8 71 50.7
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 1.3e-09 67.4 81 50.6
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.3e-09 67.4 71 47.9
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 1.3e-09 67.4 71 47.9
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 2.2e-09 66.6 71 47.9
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 2.2e-09 66.6 74 50.0
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 3.8e-09 65.9 64 54.7
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 4.9e-09 65.5 73 56.2
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 4.9e-09 65.5 66 56.1
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 4.9e-09 65.5 70 50.0
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 6.4e-09 65.1 71 49.3
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 8.4e-09 64.7 76 51.3
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 1.1e-08 64.3 76 50.0
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 1.1e-08 64.3 56 64.3
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.4e-08 63.9 71 47.9
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 1.4e-08 63.9 66 54.5
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 1.9e-08 63.5 59 59.3
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 2.4e-08 63.2 59 57.6
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 3.2e-08 62.8 77 49.4
CDE02G3020 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 3.2e-08 62.8 73 49.3
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 3.2e-08 62.8 55 58.2
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 3.2e-08 62.8 55 58.2
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 4.2e-08 62.4 59 57.6
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 4.2e-08 62.4 73 49.3
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 4.2e-08 62.4 67 52.2
Sabra19G0107900 Salix brachista HOM05D007431 ORTHO05D008438 4.2e-08 62.4 66 53.0
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 5.5e-08 62.0 55 58.2
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 7.1e-08 61.6 71 52.1
CDE01G0792 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 9.3e-08 61.2 63 54.0
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 9.3e-08 61.2 60 55.0
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 1.2e-07 60.8 59 57.6
TPR.G26566 Trifolium pratense HOM05D007431 ORTHO05D008438 1.2e-07 60.8 59 55.9
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 1.6e-07 60.5 74 44.6
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 1.6e-07 60.5 78 48.7
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 1.6e-07 60.5 59 57.6
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 2.1e-07 60.1 73 43.8
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 2.7e-07 59.7 73 45.2
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 2.7e-07 59.7 78 47.4
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 3.5e-07 59.3 56 57.1
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 4.6e-07 58.9 67 50.7
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 4.6e-07 58.9 78 52.6
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 4.6e-07 58.9 64 48.4
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 4.6e-07 58.9 65 52.3
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 6.0e-07 58.5 77 46.8
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 6.0e-07 58.5 59 54.2
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 6.0e-07 58.5 66 47.0
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 6.0e-07 58.5 58 51.7
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 6.0e-07 58.5 69 43.5
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 7.9e-07 58.2 63 46.0
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 7.9e-07 58.2 65 52.3
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 1.0e-06 57.8 68 48.5
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 1.0e-06 57.8 73 45.2
TWI53G0129 Tripterygium wilfordii HOM05D007431 ORTHO05D008438 1.0e-06 57.8 71 49.3
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.8e-06 57.0 75 45.3
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 2.3e-06 56.6 62 50.0
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 2.3e-06 56.6 70 50.0
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 3.0e-06 56.2 71 43.7
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 3.0e-06 56.2 71 43.7
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.0e-06 56.2 65 49.2
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 5.1e-06 55.5 73 46.6
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 6.7e-06 55.1 65 49.2
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 6.7e-06 55.1 57 52.6


User provided reference genes

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