Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 2.1e-35 151.8 74 100.0
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 6.2e-35 150.2 74 98.6
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 1.8e-34 148.7 74 98.6
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 1.5e-25 119.0 64 92.2
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 9.9e-25 116.3 64 92.2
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 9.9e-25 116.3 64 92.2
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 1.3e-24 115.9 64 87.5
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.3e-24 115.9 64 90.6
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 1.7e-24 115.5 64 87.5
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 2.9e-24 114.8 64 89.1
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 1.1e-23 112.8 67 83.6
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 1.6e-22 109.0 64 84.4
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 2.1e-22 108.6 64 87.5
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 2.7e-22 108.2 65 83.1
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 2.7e-22 108.2 65 83.1
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 2.7e-22 108.2 64 79.7
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 3.5e-22 107.8 64 85.9
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 4.6e-22 107.5 64 84.4
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 4.6e-22 107.5 64 84.4
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 7.8e-22 106.7 64 81.2
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 7.8e-22 106.7 64 84.4
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 7.8e-22 106.7 64 84.4
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 1.0e-21 106.3 65 78.5
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 1.0e-21 106.3 64 81.2
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 1.0e-21 106.3 65 75.4
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 81.2
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 79.7
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 79.7
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 82.8
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 79.7
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 81.2
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 81.2
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 79.7
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 81.2
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 1.3e-21 105.9 64 78.1
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 1.7e-21 105.5 64 79.7
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 1.7e-21 105.5 64 79.7
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.3e-21 105.1 64 81.2
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 2.3e-21 105.1 64 81.2
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 2.3e-21 105.1 64 79.7
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 3.0e-21 104.8 65 80.0
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 3.0e-21 104.8 68 77.9
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 3.0e-21 104.8 64 75.0
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 3.0e-21 104.8 64 79.7
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 3.9e-21 104.4 67 76.1
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 5.1e-21 104.0 67 77.6
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 5.1e-21 104.0 64 75.0
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 6.6e-21 103.6 64 81.2
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 8.7e-21 103.2 64 76.6
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 8.7e-21 103.2 64 75.0
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 8.7e-21 103.2 65 80.0
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.1e-20 102.8 65 78.5
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 1.1e-20 102.8 77 67.5
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 1.1e-20 102.8 65 78.5
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 1.1e-20 102.8 65 78.5
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 1.1e-20 102.8 65 78.5
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 1.5e-20 102.4 64 76.6
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.5e-20 102.4 65 78.5
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.9e-20 102.1 64 78.1
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.9e-20 102.1 64 78.1
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.5e-20 101.7 65 78.5
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 2.5e-20 101.7 64 73.4
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.5e-20 101.7 65 78.5
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 2.5e-20 101.7 64 75.0
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 3.3e-20 101.3 64 76.6
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 5.6e-20 100.5 63 77.8
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 5.6e-20 100.5 65 76.9
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 5.6e-20 100.5 64 79.7
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 5.6e-20 100.5 67 70.1
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 7.3e-20 100.1 64 78.1
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 7.3e-20 100.1 68 67.6
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 7.3e-20 100.1 65 73.8
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 7.3e-20 100.1 65 75.4
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 9.6e-20 99.8 64 75.0
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 1.6e-19 99.0 64 76.6
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 2.1e-19 98.6 64 71.9
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 3.6e-19 97.8 70 68.6
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 4.8e-19 97.4 65 73.8
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 4.8e-19 97.4 65 73.8
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 4.8e-19 97.4 65 73.8
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 1.1e-18 96.3 64 68.8
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 1.1e-18 96.3 64 70.3
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 1.8e-18 95.5 57 84.2
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 3.1e-18 94.7 64 70.3
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 4.0e-18 94.4 64 73.4
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 5.3e-18 94.0 74 63.5
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 5.3e-18 94.0 64 73.4
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 5.3e-18 94.0 64 73.4
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 6.9e-18 93.6 64 73.4
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 6.9e-18 93.6 64 73.4
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.2e-17 92.8 63 73.0
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 1.3e-16 89.4 60 68.3
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.3e-16 89.4 63 71.4
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 1.7e-16 89.0 61 70.5
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 6.4e-16 87.0 59 72.9
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 3.2e-15 84.7 61 65.6
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 7.9e-14 80.1 62 64.5
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 2.3e-13 78.6 52 76.9
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 2.4e-10 68.6 57 64.9
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 6.9e-10 67.0 58 58.6
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 6.9e-10 67.0 35 82.9
BolC2t07210H Brassica oleracea HOM05D007274 ORTHO05D009194 2.7e-06 55.1 30 93.3


User provided reference genes

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