Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 1.7e-280 968.8 528 100.0
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 1.2e-268 929.5 531 95.5
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 9.8e-268 926.4 530 95.3
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 6.4e-251 870.5 528 90.5
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 8.4e-251 870.2 535 88.4
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 1.8e-224 782.7 548 79.9
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 3.7e-206 721.8 543 74.4
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 2.0e-204 716.1 508 76.8
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 2.4e-197 692.6 534 71.7
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 7.0e-197 691.0 504 74.8
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 5.5e-194 681.4 542 73.4
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 1.8e-189 666.4 542 73.8
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 2.1e-161 573.2 501 62.9
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 6.4e-158 561.6 550 60.5
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 8.4e-134 481.5 491 55.2
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 6.0e-132 475.3 493 54.8
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 2.5e-130 469.9 511 51.9
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 6.2e-129 465.3 487 54.0
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 1.1e-128 464.5 504 53.6
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 5.3e-128 462.2 506 53.6
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 5.3e-128 462.2 487 54.0
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 6.9e-128 461.8 487 54.0
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 7.6e-127 458.4 489 53.2
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 4.9e-126 455.7 513 52.0
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 4.9e-126 455.7 508 51.2
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 5.4e-125 452.2 511 52.8
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 3.5e-124 449.5 508 49.4
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 6.0e-124 448.7 509 52.5
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 5.1e-123 445.7 505 51.3
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 8.7e-123 444.9 462 54.5
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 1.1e-122 444.5 496 50.8
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 6.2e-121 438.7 498 49.8
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 2.4e-120 436.8 491 51.5
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 1.3e-118 431.0 501 51.1
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 2.9e-118 429.9 494 50.2
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 1.1e-117 427.9 510 50.2
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 2.4e-117 426.8 497 49.7
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 1.2e-116 424.5 498 50.6
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 3.5e-116 422.9 506 49.6
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 6.0e-116 422.2 514 48.4
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 1.0e-115 421.4 497 50.3
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.8e-115 420.6 514 49.4
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 3.0e-115 419.9 487 49.5
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 3.9e-115 419.5 500 48.0
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 5.1e-115 419.1 502 50.0
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 5.6e-114 415.6 506 47.8
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 5.6e-114 415.6 522 48.1
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 2.8e-113 413.3 495 49.9
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 8.1e-113 411.8 508 47.8
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 2.4e-112 410.2 513 48.5
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 3.1e-112 409.8 515 48.9
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 2.9e-110 403.3 506 48.2
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 2.9e-110 403.3 401 54.9
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 8.4e-110 401.7 502 47.4
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 8.4e-110 401.7 545 44.8
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 1.1e-109 401.4 491 47.3
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 1.3e-107 394.4 558 43.2
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 3.0e-107 393.3 444 52.0
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 6.7e-107 392.1 495 46.5
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 6.7e-107 392.1 493 48.5
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 2.5e-106 390.2 460 51.1
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 9.6e-106 388.3 497 47.1
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 3.7e-105 386.3 560 45.0
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 8.2e-105 385.2 519 46.8
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 5.3e-104 382.5 493 47.7
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 1.0e-102 378.3 504 45.8
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 1.3e-102 377.9 517 45.1
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 8.4e-102 375.2 342 57.9
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 8.4e-102 375.2 342 57.9
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 9.3e-101 371.7 489 47.6
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 1.2e-100 371.3 487 46.8
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 4.6e-100 369.4 511 43.6
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 6.1e-100 369.0 494 46.2
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 7.9e-100 368.6 479 46.3
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 7.9e-100 368.6 523 44.6
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 3.0e-99 366.7 501 45.7
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 1.5e-98 364.4 493 46.0
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 1.9e-98 364.0 475 45.7
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 4.3e-98 362.8 446 48.0
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 7.4e-98 362.1 461 48.4
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 3.1e-96 356.7 504 45.4
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 1.5e-95 354.4 418 50.5
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 7.7e-95 352.1 444 48.6
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 1.0e-91 341.7 535 40.9
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 5.1e-91 339.3 556 41.0
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 6.7e-91 339.0 506 41.7
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 8.8e-91 338.6 485 43.7
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 1.8e-88 330.9 506 43.7
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 7.7e-87 325.5 365 52.3
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 3.3e-82 310.1 370 50.8
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 3.7e-81 306.6 462 42.2
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 1.1e-77 295.0 423 43.3
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 2.7e-76 290.4 416 45.4
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 4.4e-74 283.1 341 47.2
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 2.9e-70 270.4 515 35.1
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 2.9e-70 270.4 515 35.1
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 3.1e-64 250.4 489 37.4
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 3.0e-59 233.8 381 38.8
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 4.0e-59 233.4 346 41.3
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 4.0e-59 233.4 378 38.6
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 8.3e-57 225.7 427 38.6
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 1.1e-56 225.3 548 31.6
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 3.8e-54 216.9 369 37.7
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 3.8e-54 216.9 191 59.7
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.5e-45 187.6 173 57.8
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 2.7e-39 167.5 190 51.1
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 3.5e-39 167.2 196 48.0
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 3.6e-36 157.1 221 46.2
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 8.9e-35 152.5 194 46.4
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 2.2e-33 147.9 152 52.6
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 1.2e-31 142.1 268 38.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-29 135.2 113 64.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.2e-26 125.6 102 66.7
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.4e-24 118.6 100 64.0
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 5.4e-24 116.7 168 41.1
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 7.1e-24 116.3 100 63.0
BcaC03g15934 Brassica carinata HOM05D006347 ORTHO05D007835 8.9e-19 99.4 64 78.1
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 1.3e-17 95.5 351 23.9
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 5.1e-14 83.6 47 85.1
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 2.5e-13 81.3 73 53.4
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 6.9e-11 73.2 124 37.9
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 9.0e-11 72.8 65 64.6
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 4.4e-10 70.5 108 37.0
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 5.8e-10 70.1 70 51.4
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 1.0e-06 59.3 34 73.5


User provided reference genes

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