Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 2.0e-49 198.7 99 100.0
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 2.6e-12 75.5 43 72.1
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 2.2e-11 72.4 54 61.1
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 2.2e-11 72.4 54 61.1
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 4.9e-11 71.2 37 83.8
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 6.4e-11 70.9 55 65.5
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 6.4e-11 70.9 55 65.5
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-10 70.1 34 88.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 3.2e-10 68.6 29 96.6
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 5.4e-10 67.8 29 96.6
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 2.7e-09 65.5 30 93.3
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 2.7e-09 65.5 30 93.3
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.7e-09 65.5 30 93.3
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.7e-09 65.5 30 93.3
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 2.7e-09 65.5 30 93.3
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 3.5e-09 65.1 32 84.4
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 3.5e-09 65.1 30 93.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 4.6e-09 64.7 30 90.0
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 4.6e-09 64.7 30 90.0
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 4.6e-09 64.7 30 90.0
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 4.6e-09 64.7 30 90.0
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 6.0e-09 64.3 30 90.0
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 86.7
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 7.8e-09 63.9 30 90.0
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.0e-08 63.5 30 90.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.0e-08 63.5 32 81.2
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.0e-08 63.5 30 90.0
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.0e-08 63.5 30 90.0
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 1.0e-08 63.5 30 90.0
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.0e-08 63.5 30 90.0
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.3e-08 63.2 30 90.0
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 83.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 83.3
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.3e-08 62.4 30 83.3
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 83.3
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 83.3
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 2.3e-08 62.4 29 86.2
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.3e-08 62.4 30 86.7
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 83.3
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 86.7
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 86.7
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 86.7
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 86.7
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 86.7
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 3.0e-08 62.0 30 86.7
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 3.0e-08 62.0 29 86.2
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.9e-08 61.6 30 83.3
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 3.9e-08 61.6 30 83.3
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 3.9e-08 61.6 30 83.3
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.9e-08 61.6 30 83.3
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 3.9e-08 61.6 30 83.3
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 3.9e-08 61.6 30 83.3
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 5.1e-08 61.2 30 83.3
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 5.1e-08 61.2 30 83.3
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 5.1e-08 61.2 30 83.3
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 5.1e-08 61.2 30 83.3
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 5.1e-08 61.2 30 83.3
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 80.0
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 6.6e-08 60.8 31 77.4
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 6.6e-08 60.8 30 83.3
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 8.6e-08 60.5 30 83.3
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 8.6e-08 60.5 30 80.0
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.1e-07 60.1 30 80.0
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 1.5e-07 59.7 30 80.0
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.5e-07 59.7 30 80.0
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.9e-07 59.3 30 80.0
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.9e-07 59.3 30 80.0
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.5e-07 58.9 30 83.3
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.5e-07 58.9 30 76.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 2.5e-07 58.9 30 76.7
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.3e-07 58.5 29 79.3
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.3e-07 58.5 29 79.3
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 3.3e-07 58.5 30 80.0
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 3.3e-07 58.5 30 76.7
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 4.3e-07 58.2 30 80.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 4.3e-07 58.2 30 80.0
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 4.3e-07 58.2 30 73.3
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 4.3e-07 58.2 28 85.7
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 5.6e-07 57.8 30 76.7
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 5.6e-07 57.8 30 76.7
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 5.6e-07 57.8 30 73.3
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 7.3e-07 57.4 29 75.9
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 9.5e-07 57.0 29 75.9
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 9.5e-07 57.0 29 75.9
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 1.6e-06 56.2 28 78.6
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 6.2e-06 54.3 28 75.0
C07p09000 Brassica napus HOM05D038516 ORTHO05D101670 8.1e-06 53.9 28 92.9
C09p57050 Brassica napus HOM05D038516 ORTHO05D103426 8.1e-06 53.9 28 92.9
C09p66280 Brassica napus HOM05D038516 ORTHO05D101312 8.1e-06 53.9 28 92.9


User provided reference genes

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