Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 4.2e-50 201.1 101 100.0
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 4.2e-50 201.1 101 100.0
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 2.5e-31 138.7 71 95.8
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.9e-10 69.3 36 88.9
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 7.2e-10 67.4 39 79.5
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-09 66.6 36 86.1
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-09 66.6 36 86.1
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.2e-09 66.6 36 86.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-09 66.2 36 83.3
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.1e-09 65.9 39 76.9
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.1e-09 65.9 48 66.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.1e-09 65.9 36 83.3
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 3.6e-09 65.1 36 83.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.6e-09 65.1 35 82.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 6.1e-09 64.3 36 83.3
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 6.1e-09 64.3 36 83.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.0e-09 63.9 36 80.6
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 8.0e-09 63.9 36 80.6
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 8.0e-09 63.9 36 80.6
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 8.0e-09 63.9 36 80.6
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 8.0e-09 63.9 36 80.6
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-08 63.2 36 80.6
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-08 63.2 36 80.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.4e-08 63.2 36 80.6
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.4e-08 63.2 36 80.6
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-08 62.8 36 77.8
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.8e-08 62.8 36 77.8
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.3e-08 62.4 36 75.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.0e-08 62.0 35 80.0
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.0e-08 62.0 35 80.0
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.0e-08 62.0 35 80.0
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.0e-08 62.0 36 77.8
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.1e-07 60.1 36 72.2
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.3e-06 56.6 34 73.5
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.3e-06 56.6 34 73.5
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.3e-06 56.6 35 68.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.3e-06 56.6 35 68.6
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.7e-06 56.2 34 70.6
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.7e-06 56.2 39 64.1
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.7e-06 56.2 39 64.1
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.7e-06 56.2 49 59.2
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-06 55.8 34 70.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.8e-06 55.5 47 55.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 2.8e-06 55.5 34 70.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.7e-06 55.1 34 70.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.8e-06 54.7 39 61.5
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.8e-06 54.7 39 64.1
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 6.3e-06 54.3 34 67.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.3e-06 54.3 39 61.5
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 6.3e-06 54.3 39 61.5
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.3e-06 54.3 34 67.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 8.2e-06 53.9 34 67.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 8.2e-06 53.9 34 70.6


User provided reference genes

Program Settings