Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-94 349.7 172 100.0
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 3.7e-83 311.6 153 100.0
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 3.7e-83 311.6 173 91.3
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.2e-81 306.6 173 89.6
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 4.3e-79 298.1 173 85.5
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.1e-78 295.8 173 85.5
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 8.1e-78 293.9 173 85.5
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.0e-77 291.6 173 82.1
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 6.8e-77 290.8 173 82.7
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 7.5e-76 287.3 173 82.1
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.7e-75 285.0 173 82.1
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 2.7e-73 278.9 171 80.7
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.0e-72 276.9 173 78.6
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 2.4e-66 255.8 173 72.3
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.7e-46 188.7 174 57.5
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 2.4e-45 186.0 173 56.1
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 2.4e-45 186.0 173 57.8
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 2.9e-35 152.5 158 49.4
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 3.5e-33 145.6 164 47.0
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 3.5e-33 145.6 164 46.3
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 7.9e-33 144.4 178 47.2
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 1.0e-32 144.1 178 47.2
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.8e-32 143.3 175 47.4
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 5.1e-32 141.7 177 47.5
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 5.1e-32 141.7 165 47.3
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 5.7e-31 138.3 167 46.1
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 7.4e-31 137.9 179 44.7
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 9.7e-31 137.5 162 46.3
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.7e-31 137.5 162 46.3
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 2.2e-30 136.3 178 46.6
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.2e-30 136.3 162 46.3
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 2.8e-30 136.0 179 44.7
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 4.8e-30 135.2 162 45.7
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 6.3e-30 134.8 178 44.9
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.3e-30 134.8 174 46.0
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 2.4e-29 132.9 179 45.8
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 2.4e-29 132.9 179 42.5
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 4.1e-29 132.1 159 47.2
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 5.3e-29 131.7 179 44.7
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 5.3e-29 131.7 170 45.9
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.9e-29 131.3 164 44.5
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 6.9e-29 131.3 164 44.5
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 9.0e-29 131.0 174 45.4
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 9.0e-29 131.0 167 44.9
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.2e-28 130.6 176 44.3
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.2e-28 130.6 175 43.4
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.2e-28 130.6 179 44.7
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 3.4e-28 129.0 175 42.9
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 3.4e-28 129.0 180 45.0
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 4.5e-28 128.6 182 46.7
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 4.5e-28 128.6 171 43.3
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 7.6e-28 127.9 168 44.6
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 1.0e-27 127.5 169 45.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.0e-27 127.5 174 42.0
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.2e-27 126.3 182 45.1
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 3.8e-27 125.6 173 43.9
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 3.8e-27 125.6 173 43.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 1.1e-26 124.0 180 43.3
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.4e-26 123.6 183 42.6
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.9e-26 123.2 167 44.3
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.9e-26 123.2 169 43.2
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 3.2e-26 122.5 171 42.7
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 3.2e-26 122.5 173 42.8
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 3.2e-26 122.5 177 42.9
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.2e-26 122.1 171 44.4
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 4.2e-26 122.1 153 47.7
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 5.5e-26 121.7 177 44.1
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 5.5e-26 121.7 175 44.0
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 7.2e-26 121.3 173 41.6
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 9.3e-26 120.9 176 43.2
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.1e-25 119.8 182 40.7
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 2.7e-25 119.4 183 38.3
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.7e-25 119.4 166 41.6
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.6e-25 119.0 179 41.9
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 4.6e-25 118.6 169 42.0
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 7.9e-25 117.9 165 43.0
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 7.9e-25 117.9 178 43.3
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.0e-24 115.9 171 39.8
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 3.9e-24 115.5 176 42.0
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 8.7e-24 114.4 178 41.0
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 8.7e-24 114.4 170 39.4
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 1.1e-23 114.0 171 41.5
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.9e-23 113.2 178 40.4
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 2.5e-23 112.8 182 38.5
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 3.3e-23 112.5 176 41.5
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 3.3e-23 112.5 170 38.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.3e-23 112.1 180 40.0
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 5.7e-23 111.7 171 38.0
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.7e-23 111.7 178 42.7
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 7.4e-23 111.3 170 38.2
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 9.7e-23 110.9 180 40.6
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.3e-22 110.5 179 41.3
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.3e-22 110.5 182 37.9
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.3e-22 110.5 182 37.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.7e-22 110.2 169 39.6
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 2.2e-22 109.8 186 37.1
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 2.8e-22 109.4 177 41.8
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.7e-22 109.0 177 41.2
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.8e-22 108.6 172 39.5
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 6.3e-22 108.2 161 40.4
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.2e-22 107.8 166 41.0
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.1e-21 107.5 186 35.5
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 1.4e-21 107.1 174 40.2
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 1.4e-21 107.1 179 38.5
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.4e-21 107.1 132 47.0
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.8e-21 106.7 167 39.5
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.4e-21 106.3 175 39.4
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 3.1e-21 105.9 170 38.2
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.1e-21 105.5 169 39.1
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.3e-21 105.1 176 36.9
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 5.3e-21 105.1 167 39.5
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 6.9e-21 104.8 167 41.9
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.2e-20 104.0 177 40.1
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.5e-20 103.6 178 34.8
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 2.6e-20 102.8 165 40.0
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.4e-20 102.4 171 36.3
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 4.5e-20 102.1 167 38.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 7.7e-20 101.3 167 41.3
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.7e-19 100.1 173 39.3
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.9e-19 99.4 167 38.3
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 6.5e-19 98.2 171 37.4
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.1e-18 97.4 173 38.7
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.1e-18 97.4 167 37.7
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.9e-18 96.7 175 37.1
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 1.9e-18 96.7 179 39.1
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 5.5e-18 95.1 167 37.1
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 5.5e-18 95.1 167 37.1
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 9.4e-18 94.4 184 35.3
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.1e-17 93.2 177 37.3
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 2.1e-17 93.2 111 41.4
A10p18400 Brassica napus HOM05D005110 ORTHO05D006074 1.0e-16 90.9 65 72.3
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 1.4e-16 90.5 167 35.9
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 3.0e-16 89.4 171 36.3
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.7e-16 88.2 134 44.8
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 1.1e-15 87.4 120 44.2
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 4.4e-15 85.5 126 46.0
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 4.1e-13 79.0 171 34.5
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 3.4e-12 75.9 202 29.7
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 2.2e-11 73.2 101 45.5
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.9e-11 72.8 99 41.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.2e-10 69.3 100 39.0
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.2e-10 68.2 117 37.6
BraA10t43921Z Brassica rapa HOM05D005110 ORTHO05D006074 1.0e-08 64.3 52 71.2
Os02g0535300 Oryza sativa ssp. japonica HOM05D005110 ORTHO05D006074 2.2e-06 56.6 171 30.4
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 2.8e-06 56.2 68 44.1


User provided reference genes

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