Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 2.6e-50 201.8 109 100.0
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 1.3e-49 199.5 109 99.1
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.2e-49 198.7 109 98.2
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 9.4e-48 193.4 109 95.4
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 5.7e-45 184.1 109 90.8
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 7.4e-45 183.7 109 91.7
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 3.7e-44 181.4 109 89.9
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.4e-43 179.5 109 88.1
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.4e-43 178.7 110 87.3
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 4.1e-43 177.9 110 88.2
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 4.1e-43 177.9 110 88.2
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 5.3e-43 177.6 110 88.2
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 5.3e-43 177.6 110 88.2
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-42 175.6 109 88.1
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 7.7e-42 173.7 109 84.4
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.0e-41 173.3 109 86.2
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.5e-40 168.7 109 80.7
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.4e-35 152.9 108 74.1
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.8e-35 152.5 107 74.8
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.8e-35 152.5 107 73.8
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 4.1e-35 151.4 107 72.9
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 1.2e-34 149.8 108 73.1
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 7.7e-34 147.1 110 73.6
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.0e-33 146.7 106 68.9
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.1e-32 143.3 110 71.8
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.7e-31 138.7 107 66.4
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.4e-29 131.3 110 63.6
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 7.5e-29 130.6 95 78.9
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.8e-28 128.6 110 62.7
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 4.8e-28 127.9 104 65.4
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.8e-28 127.9 110 61.8
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 8.3e-28 127.1 110 63.6
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.1e-27 126.7 110 62.7
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.4e-27 126.3 102 64.7
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.8e-27 125.9 110 62.7
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 9.1e-27 123.6 110 61.8
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 1.6e-26 122.9 110 61.8
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.6e-26 122.9 110 60.9
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.7e-26 122.1 110 61.8
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 5.9e-26 120.9 110 60.9
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 5.9e-26 120.9 110 60.9
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 1.0e-25 120.2 110 61.8
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-25 119.8 129 53.5
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 1.3e-25 119.8 129 53.5
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.3e-25 119.0 109 57.8
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 2.9e-25 118.6 140 55.0
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.9e-25 118.6 110 60.0
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.9e-25 118.6 110 60.0
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 6.5e-25 117.5 110 60.9
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 6.5e-25 117.5 110 60.9
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 8.6e-25 117.1 110 60.9
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.6e-25 117.1 109 56.9
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 8.6e-25 117.1 110 58.2
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.9e-24 115.9 110 60.0
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 2.5e-24 115.5 110 58.2
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 4.2e-24 114.8 110 58.2
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.2e-24 114.8 110 60.9
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 5.5e-24 114.4 110 58.2
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 7.2e-24 114.0 110 57.3
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 1.6e-23 112.8 110 60.9
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.6e-23 112.8 110 60.9
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.8e-23 112.1 110 56.4
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.8e-23 112.1 110 56.4
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 2.8e-23 112.1 110 58.2
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 6.1e-23 110.9 110 58.2
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 8.0e-23 110.5 110 57.3
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 8.0e-23 110.5 110 56.4
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 1.0e-22 110.2 89 64.0
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 1.0e-22 110.2 110 56.4
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 1.4e-22 109.8 89 62.9
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.4e-22 109.8 110 57.3
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 3.0e-22 108.6 110 57.3
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.0e-22 108.6 110 57.3
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.0e-22 108.6 110 57.3
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.0e-22 108.6 110 56.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 4.0e-22 108.2 110 50.9
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 4.0e-22 108.2 110 56.4
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 4.0e-22 108.2 110 57.3
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 5.2e-22 107.8 109 55.0
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 5.2e-22 107.8 110 53.6
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 5.2e-22 107.8 111 55.9
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.2e-22 107.8 110 56.4
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 6.8e-22 107.5 75 76.0
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 8.9e-22 107.1 110 55.5
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.2e-21 106.7 110 55.5
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.2e-21 106.7 109 56.0
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.5e-21 106.3 109 56.0
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 2.0e-21 105.9 84 66.7
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 2.6e-21 105.5 102 57.8
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.6e-21 105.5 110 56.4
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.6e-21 105.5 110 51.8
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.6e-21 105.5 110 52.7
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.4e-21 105.1 110 51.8
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 4.4e-21 104.8 110 50.9
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 4.4e-21 104.8 110 55.5
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 4.4e-21 104.8 110 52.7
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 5.7e-21 104.4 110 57.3
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 5.7e-21 104.4 110 56.4
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 7.5e-21 104.0 110 55.5
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.3e-20 103.2 112 55.4
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.7e-20 102.8 110 54.5
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.2e-20 102.4 109 52.3
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 2.2e-20 102.4 126 50.0
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 3.7e-20 101.7 110 52.7
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 4.9e-20 101.3 109 53.2
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 8.3e-20 100.5 110 54.5
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 8.3e-20 100.5 109 52.3
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 1.1e-19 100.1 110 56.4
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.4e-19 99.0 108 52.8
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.4e-19 99.0 110 50.9
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 3.1e-19 98.6 79 74.7
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 5.4e-19 97.8 89 61.8
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 7.0e-19 97.4 108 50.0
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 9.2e-19 97.1 110 49.1
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 9.2e-19 97.1 113 51.3
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-18 96.7 110 49.1
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-18 96.7 110 49.1
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.2e-18 96.7 110 49.1
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.2e-18 96.7 110 53.6
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.6e-18 96.3 110 50.0
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.6e-18 96.3 97 49.5
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 1.6e-18 96.3 92 57.6
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.0e-17 93.6 110 50.9
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.0e-17 93.6 105 51.4
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.3e-17 93.2 92 52.2
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-17 92.8 116 51.7
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.5e-16 89.7 108 44.4
CARHR191280 Cardamine hirsuta HOM05D003660 ORTHO05D003415 1.9e-16 89.4 58 79.3
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 2.5e-16 89.0 52 92.3
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.5e-16 89.0 109 46.8
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 4.3e-16 88.2 98 52.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.3e-16 88.2 90 54.4
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 7.3e-16 87.4 75 61.3
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 7.3e-16 87.4 109 50.5
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 7.3e-16 87.4 109 50.5
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 1.2e-15 86.7 110 47.3
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 3.6e-15 85.1 110 47.3
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 8.0e-15 84.0 91 53.8
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.4e-14 83.2 110 49.1
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.8e-14 82.8 98 49.0
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.8e-14 82.8 89 52.8
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.8e-14 82.8 109 45.9
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.0e-14 82.0 89 51.7
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 5.2e-14 81.3 104 48.1
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 5.2e-14 81.3 119 43.7
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.9e-14 80.5 89 50.6
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 8.9e-14 80.5 109 46.8
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 8.9e-14 80.5 91 50.5
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.2e-13 80.1 89 50.6
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 1.5e-13 79.7 130 43.1
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 2.0e-13 79.3 109 42.2
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 2.6e-13 79.0 110 41.8
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 9.8e-13 77.0 92 51.1
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.3e-12 76.6 92 44.6
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 1.7e-12 76.3 100 47.0
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 2.9e-12 75.5 109 45.0
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.9e-12 75.5 90 48.9
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.9e-12 74.7 92 47.8
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 6.4e-12 74.3 101 47.5
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.1e-11 73.6 110 40.9
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.1e-11 73.6 111 41.4
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.4e-11 72.4 85 45.9
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 5.4e-11 71.2 112 44.6
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 7.0e-11 70.9 94 46.8
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 4.6e-10 68.2 97 41.2
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 1.3e-09 66.6 100 40.0
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 3.9e-09 65.1 96 39.6
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 3.9e-09 65.1 100 42.0
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 3.9e-09 65.1 99 41.4
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 8.6e-09 63.9 91 39.6
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.1e-08 63.5 101 42.6
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 1.1e-08 63.5 69 52.2
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 1.9e-08 62.8 44 77.3
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 3.3e-08 62.0 100 41.0
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 3.3e-08 62.0 110 40.0
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 4.3e-08 61.6 99 41.4
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 9.5e-08 60.5 101 41.6
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 1.2e-07 60.1 86 43.0
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 1.6e-07 59.7 48 60.4
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 8.0e-07 57.4 53 54.7
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 1.8e-06 56.2 110 38.2
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 2.3e-06 55.8 58 53.4
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 4.0e-06 55.1 56 57.1
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 4.0e-06 55.1 60 53.3
Zm00001eb213520 Zea mays HOM05D026384 ORTHO05D003415 8.9e-06 53.9 51 52.9
Zm00001eb297060 Zea mays HOM05D026384 ORTHO05D004838 8.9e-06 53.9 51 52.9
Zm00001eb303600 Zea mays HOM05D026384 ORTHO05D003415 8.9e-06 53.9 51 52.9


User provided reference genes

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