Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 7.5e-253 876.7 442 100.0
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 2.0e-242 842.0 448 96.0
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 4.0e-238 827.8 442 95.7
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 6.0e-234 813.9 424 96.9
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.4e-229 798.1 426 94.1
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 2.5e-224 781.9 453 88.1
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 7.8e-218 760.4 450 85.3
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.6e-217 756.9 437 87.9
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 4.4e-213 744.6 453 83.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.3e-212 743.0 454 83.5
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 6.9e-206 720.7 442 81.7
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-205 719.9 405 90.9
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.5e-205 719.5 417 89.2
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.9e-204 715.3 467 79.7
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 6.4e-196 687.6 434 79.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.9e-179 632.9 432 71.8
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.5e-179 632.5 433 72.7
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 9.3e-179 630.6 420 73.8
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.0e-177 627.1 437 71.2
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.0e-177 627.1 437 71.2
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.0e-177 627.1 434 71.2
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.3e-177 626.7 434 70.7
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.3e-175 620.2 433 71.1
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.6e-175 619.8 433 70.4
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.2e-175 619.4 427 70.7
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 2.8e-175 619.0 436 69.5
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.7e-175 618.6 417 71.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 4.8e-175 618.2 420 71.7
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 6.3e-175 617.8 417 74.3
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 3.1e-174 615.5 434 69.6
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 5.3e-174 614.8 432 69.2
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.2e-173 613.6 418 71.8
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.0e-173 612.8 434 68.4
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 3.4e-173 612.1 431 68.7
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.4e-173 612.1 418 71.8
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.4e-173 612.1 432 69.9
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 4.5e-173 611.7 429 68.1
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.9e-173 611.3 443 67.7
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.7e-173 610.9 418 70.6
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 7.7e-173 610.9 431 68.4
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.0e-172 610.5 466 67.2
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.0e-172 610.5 437 69.3
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.2e-172 609.4 430 68.4
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 5.0e-172 608.2 431 69.4
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 5.0e-172 608.2 431 68.7
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 5.5e-171 604.7 418 69.1
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 9.4e-171 604.0 443 66.8
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.6e-170 603.2 432 69.0
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.6e-170 603.2 420 70.0
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 4.6e-170 601.7 436 67.7
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.4e-169 600.1 435 68.7
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.8e-169 599.7 434 68.7
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.0e-169 599.0 435 66.0
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.0e-169 599.0 420 69.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.0e-169 599.0 433 68.4
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.9e-169 598.6 430 69.3
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 8.8e-169 597.4 417 70.7
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 2.5e-168 595.9 435 67.6
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.3e-168 595.1 429 66.7
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 5.7e-168 594.7 436 66.7
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 9.7e-168 594.0 432 68.1
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.3e-167 593.6 425 66.6
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.8e-167 592.4 419 67.1
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 8.2e-167 590.9 434 66.8
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-166 590.5 435 65.3
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 6.9e-166 587.8 459 64.5
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 9.1e-166 587.4 431 66.6
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.2e-165 587.0 435 66.0
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.2e-165 587.0 433 66.7
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.5e-165 586.6 433 66.3
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.6e-165 585.9 433 66.3
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 2.2e-164 582.8 419 68.3
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.4e-163 580.1 462 64.3
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 4.2e-163 578.6 429 66.7
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.2e-163 578.6 434 66.1
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.1e-162 576.2 432 67.4
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.0e-161 573.9 402 70.9
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.8e-161 573.2 435 66.7
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.9e-161 572.0 487 60.8
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 2.8e-159 565.8 394 68.8
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.4e-158 562.8 452 62.8
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.2e-154 550.4 413 68.5
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 5.7e-152 541.6 409 67.5
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 8.2e-151 537.7 423 64.3
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.4e-150 537.0 450 62.0
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.0e-150 534.6 435 61.6
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.5e-147 526.2 377 66.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.8e-145 520.0 281 93.2
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.4e-142 510.4 424 61.8
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 5.2e-137 491.9 390 60.3
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.7e-135 486.9 369 64.0
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.8e-135 486.1 409 60.4
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.4e-134 483.8 331 72.8
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 2.9e-132 476.1 418 59.1
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.5e-131 473.8 336 72.6
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 9.5e-131 471.1 396 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.0e-129 467.6 405 58.5
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 5.2e-129 465.3 410 55.9
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 5.7e-128 461.8 329 69.3
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 5.7e-128 461.8 334 68.9
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.0e-126 454.9 406 58.1
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 2.7e-125 453.0 340 66.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 8.6e-124 448.0 432 53.5
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 3.3e-123 446.0 321 67.3
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.8e-122 443.0 349 63.9
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.8e-121 440.3 343 65.3
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 2.3e-121 439.9 428 56.1
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 5.2e-121 438.7 397 55.4
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 3.2e-110 402.9 312 65.7
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.2e-110 402.9 333 62.2
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.7e-108 397.1 421 51.3
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.1e-106 390.2 235 85.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 6.0e-101 372.1 587 38.0
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 6.6e-100 368.6 280 63.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.3e-92 344.4 365 54.5
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.8e-90 335.9 370 51.9
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.9e-88 328.2 250 66.0
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 8.4e-87 325.1 280 60.0
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.7e-84 317.4 270 58.9
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.3e-84 317.0 410 43.7
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 8.7e-84 315.1 342 52.3
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 3.8e-79 299.7 197 70.6
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.8e-79 299.7 422 41.7
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 4.9e-79 299.3 409 43.8
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.4e-78 297.0 166 92.8
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-78 297.0 249 69.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 6.7e-76 288.9 392 43.1
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 8.7e-68 261.9 230 56.5
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 2.4e-65 253.8 216 58.8
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 7.6e-64 248.8 156 75.0
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 7.6e-64 248.8 462 35.5
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 7.9e-61 238.8 407 38.1
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.0e-60 238.4 348 41.1
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.8e-60 237.7 149 75.2
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.3e-60 237.3 415 38.1
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 2.8e-58 230.3 148 73.6
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.4e-54 218.0 144 72.2
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 2.0e-51 207.6 136 72.1
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.0e-51 207.6 182 58.2
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.3e-51 206.5 145 70.3
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.9e-44 183.3 122 73.0
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 4.4e-43 179.9 110 77.3
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 3.6e-37 160.2 124 74.2
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.0e-28 132.1 89 67.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.0e-28 132.1 89 67.4
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.4e-28 131.7 413 27.8
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 5.4e-25 119.8 92 62.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.6e-21 107.1 72 68.1
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 8.6e-15 85.9 335 26.3
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 4.3e-14 83.6 102 47.1
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 4.0e-12 77.0 58 60.3
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-09 68.2 59 55.9
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 2.0e-08 64.7 52 55.8
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 2.7e-08 64.3 52 55.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 2.7e-08 64.3 52 55.8
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 4.6e-08 63.5 43 58.1
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 5.9e-08 63.2 66 47.0
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.9e-07 60.5 270 27.0
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 1.5e-06 58.5 221 26.7
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.9e-06 58.2 208 26.9
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 3.3e-06 57.4 254 25.6
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 5.6e-06 56.6 319 26.3
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 7.3e-06 56.2 313 26.5


User provided reference genes

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