Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p10070 Brassica napus HOM05D001137 ORTHO05D005066 1.1e-27 125.9 64 100.0
BolC2t06908H Brassica oleracea HOM05D000116 ORTHO05D000133 2.5e-16 88.2 50 90.0
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 1.1e-11 72.8 48 79.2
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 1.4e-11 72.4 48 79.2
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 2.4e-11 71.6 48 77.1
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 2.4e-11 71.6 52 73.1
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 2.4e-11 71.6 48 77.1
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 3.2e-11 71.2 48 77.1
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 4.1e-11 70.9 48 75.0
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 4.1e-11 70.9 48 75.0
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 4.1e-11 70.9 48 75.0
arahy.Tifrunner.gnm1.ann1.CD5QST Arachis hypogaea HOM05D001137 ORTHO05D005066 5.4e-11 70.5 47 76.6
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 5.4e-11 70.5 47 76.6
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 5.4e-11 70.5 47 76.6
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 5.4e-11 70.5 48 77.1
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 5.4e-11 70.5 48 75.0
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 5.4e-11 70.5 48 75.0
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 7.0e-11 70.1 48 75.0
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 7.0e-11 70.1 48 75.0
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 7.0e-11 70.1 48 75.0
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 7.0e-11 70.1 48 75.0
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 7.0e-11 70.1 48 75.0
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 7.0e-11 70.1 48 75.0
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 9.2e-11 69.7 48 75.0
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 9.2e-11 69.7 48 75.0
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 1.2e-10 69.3 48 75.0
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 1.2e-10 69.3 48 75.0
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.2e-10 69.3 48 75.0
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 1.2e-10 69.3 48 72.9
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 1.2e-10 69.3 48 72.9
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 1.2e-10 69.3 48 75.0
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.6e-10 68.9 48 75.0
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 1.6e-10 68.9 48 75.0
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 1.6e-10 68.9 48 75.0
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 1.6e-10 68.9 47 74.5
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 72.9
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 75.0
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 75.0
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 75.0
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 75.0
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 75.0
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 2.0e-10 68.6 47 74.5
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 2.0e-10 68.6 48 70.8
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 2.7e-10 68.2 48 75.0
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 2.7e-10 68.2 48 75.0
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 2.7e-10 68.2 48 72.9
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 2.7e-10 68.2 48 72.9
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 2.7e-10 68.2 48 75.0
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 3.5e-10 67.8 48 72.9
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 3.5e-10 67.8 48 72.9
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 3.5e-10 67.8 48 72.9
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 3.5e-10 67.8 48 72.9
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 6.0e-10 67.0 48 72.9
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 6.0e-10 67.0 44 79.5
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 6.0e-10 67.0 48 72.9
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 7.8e-10 66.6 48 72.9
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 7.8e-10 66.6 48 72.9
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 1.0e-09 66.2 48 72.9
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 1.0e-09 66.2 48 70.8
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 1.0e-09 66.2 48 70.8
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 1.3e-09 65.9 48 70.8
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 1.3e-09 65.9 48 68.8
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 1.7e-09 65.5 48 70.8
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 2.3e-09 65.1 46 73.9
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 2.3e-09 65.1 48 70.8
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 3.0e-09 64.7 48 70.8
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 5.0e-09 63.9 47 70.2
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 5.0e-09 63.9 47 70.2
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 5.0e-09 63.9 48 68.8
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 5.0e-09 63.9 48 64.6
Mapoly0008s0142 Marchantia polymorpha HOM05D001137 ORTHO05D005066 1.6e-07 58.9 43 69.8
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 2.8e-07 58.2 47 61.7
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 2.8e-07 58.2 47 61.7
SMO141G0291 Selaginella moellendorffii HOM05D001137 ORTHO05D005066 4.7e-07 57.4 46 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 8.1e-07 56.6 48 58.3
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 8.1e-07 56.6 47 61.7
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 4.0e-06 54.3 47 61.7


User provided reference genes

Program Settings