Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 9.3e-71 270.4 167 100.0
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 9.3e-71 270.4 167 100.0
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 3.1e-66 255.4 161 97.5
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 9.9e-65 250.4 167 91.0
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 2.2e-64 249.2 168 91.7
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 2.4e-63 245.7 167 91.0
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 2.1e-62 242.7 161 91.9
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 1.3e-61 240.0 169 91.1
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 1.8e-61 239.6 167 90.4
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 4.5e-57 224.9 168 88.7
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 9.9e-57 223.8 166 84.9
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 1.9e-55 219.5 170 86.5
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 1.3e-53 213.4 171 83.0
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 3.7e-51 205.3 173 82.7
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 1.1e-50 203.8 182 67.0
BcaB08g36664 Brassica carinata HOM05D006881 ORTHO05D008423 5.0e-40 168.3 167 72.5
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 8.5e-40 167.5 161 64.6
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 9.3e-39 164.1 121 73.6
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 2.7e-38 162.5 161 69.6
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 2.7e-38 162.5 164 70.7
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 1.0e-37 160.6 108 76.9
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 2.3e-37 159.5 161 65.2
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 3.0e-37 159.1 115 73.9
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 5.1e-37 158.3 162 62.3
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 8.8e-37 157.5 161 65.8
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 1.1e-36 157.1 113 71.7
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 1.3e-35 153.7 119 65.5
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 1.3e-35 153.7 113 69.9
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 1.7e-35 153.3 110 75.5
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 3.7e-35 152.1 111 73.0
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 3.7e-35 152.1 116 70.7
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 1.1e-34 150.6 169 57.4
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 1.1e-34 150.6 161 64.0
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 1.4e-34 150.2 117 65.0
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 1.4e-34 150.2 113 69.9
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 1.8e-34 149.8 119 65.5
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 2.4e-34 149.4 120 66.7
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 5.3e-34 148.3 118 66.9
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 9.1e-34 147.5 160 65.0
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 1.2e-33 147.1 104 74.0
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 1.2e-33 147.1 160 64.4
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 1.2e-33 147.1 115 67.8
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 1.2e-33 147.1 106 71.7
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 1.5e-33 146.7 115 66.1
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.5e-33 146.7 119 67.2
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.5e-33 146.7 119 67.2
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 4.5e-33 145.2 165 62.4
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 5.9e-33 144.8 113 68.1
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 7.7e-33 144.4 102 70.6
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 7.7e-33 144.4 109 66.1
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 1.0e-32 144.1 112 70.5
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.3e-32 143.7 120 68.3
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.3e-32 143.7 120 68.3
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 1.7e-32 143.3 156 67.3
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 1.7e-32 143.3 105 72.4
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 1.7e-32 143.3 124 65.3
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 1.7e-32 143.3 111 67.6
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 2.2e-32 142.9 123 63.4
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 2.9e-32 142.5 160 63.1
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 2.9e-32 142.5 121 63.6
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 5.0e-32 141.7 118 66.9
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 6.5e-32 141.4 112 66.1
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 1.1e-31 140.6 102 69.6
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 1.4e-31 140.2 116 65.5
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 1.9e-31 139.8 117 65.0
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 2.5e-31 139.4 114 64.9
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 3.2e-31 139.0 107 72.0
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 9.4e-31 137.5 111 69.4
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 2.1e-30 136.3 112 68.8
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 2.1e-30 136.3 102 69.6
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 2.7e-30 136.0 106 70.8
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 2.7e-30 136.0 102 72.5
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 4.7e-30 135.2 103 71.8
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 6.1e-30 134.8 102 70.6
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 7.9e-30 134.4 117 65.0
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 7.9e-30 134.4 119 63.9
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 7.9e-30 134.4 119 63.9
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 7.9e-30 134.4 119 63.9
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 7.9e-30 134.4 119 63.9
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 1.8e-29 133.3 102 70.6
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 3.0e-29 132.5 119 63.0
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 6.7e-29 131.3 109 61.5
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 6.7e-29 131.3 163 60.1
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 8.8e-29 131.0 121 59.5
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 8.8e-29 131.0 125 59.2
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 1.5e-28 130.2 124 58.9
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 1.5e-28 130.2 110 63.6
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 2.0e-28 129.8 120 61.7
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 5.7e-28 128.3 213 52.6
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 7.4e-28 127.9 218 51.8
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 9.7e-28 127.5 102 64.7
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 1.3e-27 127.1 106 63.2
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 1.7e-27 126.7 109 61.5
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 2.8e-27 125.9 108 62.0
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 3.7e-27 125.6 85 75.3
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 6.3e-27 124.8 109 61.5
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 2.4e-26 122.9 107 60.7
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 3.1e-26 122.5 82 76.8
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 6.9e-26 121.3 102 66.7
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 9.1e-26 120.9 82 76.8
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 1.7e-24 116.7 123 53.7
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 3.8e-24 115.5 85 67.1
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 5.0e-24 115.2 87 72.4
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 8.5e-24 114.4 124 53.2
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 1.4e-23 113.6 111 56.8
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 2.7e-22 109.4 115 47.8
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 3.0e-21 105.9 64 82.8
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 1.1e-20 104.0 84 66.7
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 4.4e-20 102.1 122 48.4
CSS0015929 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.8e-19 99.4 176 51.7
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 3.7e-19 99.0 107 52.3
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 2.0e-17 93.2 106 50.0
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 2.9e-16 89.4 78 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 3.6e-14 82.4 81 53.1
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 3.6e-14 82.4 53 73.6
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 1.7e-11 73.6 86 45.3
CSS0002463 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.8e-11 72.8 104 48.1
Nitab4.5_0000784g0080 Nicotiana tabacum HOM05D006881 ORTHO05D008423 2.1e-06 56.6 118 39.8


User provided reference genes

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