Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p09800 Brassica napus HOM05D002211 ORTHO05D002206 3.8e-80 301.6 168 100.0
BolC2t06888H Brassica oleracea HOM05D002211 ORTHO05D002206 7.1e-79 297.4 168 99.4
A02p04820 Brassica napus HOM05D002211 ORTHO05D002206 1.0e-72 276.9 180 89.4
BraA02t05441Z Brassica rapa HOM05D002211 ORTHO05D002206 2.5e-71 272.3 168 94.6
Sp6g26000 Schrenkiella parvula HOM05D002211 ORTHO05D002206 4.6e-62 241.5 169 84.0
BcaB08g36688 Brassica carinata HOM05D002211 ORTHO05D002206 5.1e-61 238.0 169 85.2
A10p21210 Brassica napus HOM05D002211 ORTHO05D002206 5.1e-61 238.0 166 84.9
C09p58640 Brassica napus HOM05D002211 ORTHO05D002206 5.1e-61 238.0 166 84.9
BolC9t58706H Brassica oleracea HOM05D002211 ORTHO05D002206 5.1e-61 238.0 166 84.9
Thhalv10014852m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 5.7e-60 234.6 168 84.5
BraA10t44184Z Brassica rapa HOM05D002211 ORTHO05D002206 1.3e-59 233.4 167 84.4
CARHR194750 Cardamine hirsuta HOM05D002211 ORTHO05D002206 7.2e-55 217.6 165 68.5
AL6G29540 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 1.5e-52 209.9 166 78.9
Carub.0006s1659 Capsella rubella HOM05D002211 ORTHO05D002206 1.2e-49 200.3 166 66.3
AT5G18310 Arabidopsis thaliana HOM05D002211 ORTHO05D002206 2.2e-43 179.5 139 78.4
Aa31LG11G11290 Aethionema arabicum HOM05D002211 ORTHO05D002206 1.1e-42 177.2 186 64.5
THA.LOC104820745 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 2.3e-37 159.5 175 59.4
THA.LOC104827277 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 5.0e-32 141.7 171 50.9
COL.COLO4_20545 Corchorus olitorius HOM05D002211 ORTHO05D002206 7.7e-25 117.9 179 45.3
Gohir.D11G250800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 9.4e-23 110.9 181 40.9
Gohir.A11G241500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-22 110.2 181 39.8
Thecc.05G260900 Theobroma cacao HOM05D002211 ORTHO05D002206 1.6e-22 110.2 172 40.7
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 3.6e-22 109.0 177 41.8
Duzib177G1183 Durio zibethinus HOM05D002211 ORTHO05D002206 2.3e-21 106.3 177 38.4
Duzib106G0223 Durio zibethinus HOM05D002211 ORTHO05D002206 3.0e-21 105.9 176 39.8
Manes.09G144900 Manihot esculenta HOM05D002211 ORTHO05D002206 3.0e-21 105.9 176 41.5
TWI60G0660 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 8.8e-21 104.4 169 41.4
Duzib128G1915 Durio zibethinus HOM05D002211 ORTHO05D002206 3.4e-20 102.4 185 42.2
Lalb_Chr02g0149321 Lupinus albus HOM05D002211 ORTHO05D002206 7.5e-20 101.3 170 49.4
Potri.019G029600 Populus trichocarpa HOM05D002211 ORTHO05D002206 9.8e-20 100.9 177 37.9
FvH4_6g01210 Fragaria vesca HOM05D002211 ORTHO05D002206 1.7e-19 100.1 172 38.4
FAN05G1779 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.2e-19 99.8 172 38.4
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.2e-19 99.8 172 38.4
Potri.013G052600 Populus trichocarpa HOM05D002211 ORTHO05D002206 2.2e-19 99.8 167 38.3
TWI32G0781 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 2.2e-19 99.8 179 39.1
RcHm_v2.0_Chr3g0448791 Rosa chinensis HOM05D002211 ORTHO05D002206 3.7e-19 99.0 176 41.5
TPR.G4687 Trifolium pratense HOM05D002211 ORTHO05D002206 3.7e-19 99.0 168 39.9
Ciclev10022368m.g Citrus clementina HOM05D002211 ORTHO05D002206 1.1e-18 97.4 187 40.6
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 1.1e-18 97.4 155 40.6
Ca_09451_v3 Cicer arietinum L. HOM05D002211 ORTHO05D002206 1.8e-18 96.7 177 40.1
MD04G1235700 Malus domestica HOM05D002211 ORTHO05D002206 3.1e-18 95.9 190 38.9
Nitab4.5_0004201g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.1e-18 95.9 157 42.0
Prupe.6G355600 Prunus persica HOM05D002211 ORTHO05D002206 4.1e-18 95.5 183 38.8
CANSAT54G2545 Cannabis sativa HOM05D002211 ORTHO05D002206 5.4e-18 95.1 176 40.9
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 2.0e-17 93.2 162 38.3
Eucgr.B02173 Eucalyptus grandis HOM05D002211 ORTHO05D002206 2.0e-17 93.2 190 36.3
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 2.7e-17 92.8 172 36.6
MD12G1253400 Malus domestica HOM05D002211 ORTHO05D002206 3.5e-17 92.4 192 38.5
Migut.F02065 Erythranthe guttata HOM05D002211 ORTHO05D002206 5.9e-17 91.7 173 39.3
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 7.7e-17 91.3 152 40.1
Medtr7g116610 Medicago truncatula HOM05D002211 ORTHO05D002206 1.0e-16 90.9 165 39.4
PGR142G0339 Punica granatum HOM05D002211 ORTHO05D002206 1.0e-16 90.9 175 37.1
Glyma.19G250900 Glycine max HOM05D002211 ORTHO05D002206 1.3e-16 90.5 184 37.5
FAN02G1834 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.7e-16 90.1 203 33.5
Psat0s3038g0080 Pisum sativum HOM05D002211 ORTHO05D002206 2.3e-16 89.7 169 39.1
VMungo0540G2450 Vigna mungo HOM05D002211 ORTHO05D002206 2.3e-16 89.7 189 39.2
Phvul.006G108100 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 3.8e-16 89.0 189 38.6
MSTRG.9225 Avicennia marina HOM05D002211 ORTHO05D002206 6.6e-16 88.2 175 37.1
MSTRG.8176 Avicennia marina HOM05D002211 ORTHO05D002206 1.1e-15 87.4 167 38.3
Dinv10852 Davidia involucrata HOM05D002211 ORTHO05D002206 1.1e-15 87.4 183 36.6
Gorai.007G268900 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.1e-15 87.4 170 38.2
Lalb_Chr04g0261851 Lupinus albus HOM05D002211 ORTHO05D002206 1.9e-15 86.7 167 37.1
Lj1g0002409 Lotus japonicus HOM05D002211 ORTHO05D002206 3.3e-15 85.9 153 37.9
arahy.Tifrunner.gnm1.ann1.ML5U0X Arachis hypogaea HOM05D002211 ORTHO05D002206 5.6e-15 85.1 181 36.5
CsaV3_2G010180 Cucumis sativus L. HOM05D002211 ORTHO05D002206 5.6e-15 85.1 169 37.9
SalBow1G6037 Salvia bowleyana HOM05D002211 ORTHO05D002206 5.6e-15 85.1 168 38.1
Solyc04g050790.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 5.6e-15 85.1 160 37.5
PGSC0003DMG400004509 Solanum tuberosum HOM05D002211 ORTHO05D002206 5.6e-15 85.1 161 37.9
Gohir.A13G102400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 7.3e-15 84.7 187 34.8
MELO3C008671.2 Cucumis melo HOM05D002211 ORTHO05D002206 9.5e-15 84.3 176 36.4
Peaxi162Scf00071g00139 Petunia axillaris HOM05D002211 ORTHO05D002206 9.5e-15 84.3 160 38.1
Sabra19G0036300 Salix brachista HOM05D002211 ORTHO05D002206 9.5e-15 84.3 160 36.2
Sabra19G0039400 Salix brachista HOM05D002211 ORTHO05D002206 9.5e-15 84.3 160 36.2
Oeu001241.1 Olea europaea HOM05D002211 ORTHO05D002206 1.2e-14 84.0 162 35.8
Sopen04g021740 Solanum pennellii HOM05D002211 ORTHO05D002206 1.2e-14 84.0 160 37.5
A04p06090 Brassica napus HOM05D002211 ORTHO05D002206 1.6e-14 83.6 64 71.9
FvH4_6g01200 Fragaria vesca HOM05D001040 ORTHO05D002795 2.1e-14 83.2 157 35.7
Sabra13G0047200 Salix brachista HOM05D002211 ORTHO05D002206 2.8e-14 82.8 144 36.1
FAN05G1484 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.6e-14 82.4 155 36.1
Glyma.03G253400 Glycine max HOM05D002211 ORTHO05D002206 3.6e-14 82.4 158 38.6
Haze_04489 Corylus avellana HOM05D002211 ORTHO05D002206 1.0e-13 80.9 164 36.0
Sed0010531 Sechium edule HOM05D002211 ORTHO05D002206 1.4e-13 80.5 153 36.6
Psat3g005480 Pisum sativum HOM05D002211 ORTHO05D002206 1.8e-13 80.1 152 40.1
EL10Ac4g09798 Beta vulgaris HOM05D002211 ORTHO05D002206 2.3e-13 79.7 167 39.5
PSO357G0293 Papaver somniferum HOM05D002211 ORTHO05D002206 4.0e-13 79.0 183 31.7
SGA_v2.0_scaffold13G06340 Striga asiatica HOM05D002211 ORTHO05D002206 4.0e-13 79.0 155 38.1
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 4.0e-13 79.0 163 36.2
Phvul.L001850 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 8.9e-13 77.8 162 35.8
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 1.2e-12 77.4 160 35.6
Psat3g005600 Pisum sativum HOM05D002211 ORTHO05D002206 2.0e-12 76.6 157 35.7
Atru.chr2.1234 Acer truncatum HOM05D002211 ORTHO05D002206 2.6e-12 76.3 178 36.5
Eucgr.H04158 Eucalyptus grandis HOM05D002211 ORTHO05D002206 2.6e-12 76.3 162 38.3
PSO170G3935 Papaver somniferum HOM05D002211 ORTHO05D002206 2.6e-12 76.3 177 30.5
ClCG11G010190 Citrullus lanatus HOM05D002211 ORTHO05D002206 3.4e-12 75.9 147 35.4
Gohir.D13G105700 Gossypium hirsutum HOM05D002211 ORTHO05D002206 4.4e-12 75.5 170 35.3
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 5.7e-12 75.1 164 34.1
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 5.7e-12 75.1 154 39.0
ATR0686G227 Amborella trichopoda HOM05D002211 ORTHO05D002206 2.9e-11 72.8 145 37.9
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 2.9e-11 72.8 151 33.8
Gorai.013G118400 Gossypium raimondii HOM05D002211 ORTHO05D002206 3.7e-11 72.4 172 35.5
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 4.9e-11 72.0 155 38.1
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 8.3e-11 71.2 154 35.1
Actinidia34770 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.4e-10 70.5 196 31.6
Rhsim09G0131800 Rhododendron simsii HOM05D002211 ORTHO05D002206 1.8e-10 70.1 161 32.9
Glyma.10G169100 Glycine max HOM05D002211 ORTHO05D002206 3.2e-10 69.3 172 32.0
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 3.2e-10 69.3 160 34.4
Hund07149 Selenicereus undatus HOM05D002211 ORTHO05D002206 4.1e-10 68.9 191 31.4
TAR633G0017 Trochodendron aralioides HOM05D002211 ORTHO05D002206 9.2e-10 67.8 168 33.9
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.2e-09 67.4 150 31.3
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 1.2e-09 67.4 154 33.8
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 1.2e-09 67.4 154 33.1
CDE05G1888 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 1.6e-09 67.0 153 33.3
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-09 67.0 150 31.3
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.6e-09 67.0 150 31.3
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.0e-09 66.6 170 32.4
MD10G1152300 Malus domestica HOM05D002211 ORTHO05D002206 2.0e-09 66.6 168 31.5
CDE05G0436 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 2.7e-09 66.2 152 32.9
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 2.7e-09 66.2 159 32.7
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 2.7e-09 66.2 154 31.8
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 3.5e-09 65.9 154 31.8
MBI07_g35241_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 3.5e-09 65.9 158 32.3
HPP92_021397 Vanilla planifolia HOM05D002211 ORTHO05D002206 3.5e-09 65.9 142 35.9
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 4.6e-09 65.5 158 31.6
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 5.9e-09 65.1 154 30.5
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 5.9e-09 65.1 169 30.8
TAR365G1226 Trochodendron aralioides HOM05D002211 ORTHO05D002206 5.9e-09 65.1 160 35.0
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 7.8e-09 64.7 150 34.0
QL01p047517 Quercus lobata HOM05D002211 ORTHO05D002206 7.8e-09 64.7 171 32.7
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 7.8e-09 64.7 170 31.8
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 1.3e-08 63.9 150 32.7
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 1.3e-08 63.9 156 35.3
unitig_37.g12278 Utricularia gibba HOM05D002211 ORTHO05D002206 1.7e-08 63.5 139 33.1
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 2.3e-08 63.2 155 31.6
FAN15G0122 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.0e-08 62.8 159 31.4
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 3.0e-08 62.8 169 30.8
Gohir.D08G053500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.9e-08 62.4 39 69.2
Gorai.011G084500 Gossypium raimondii HOM05D002211 ORTHO05D002206 3.9e-08 62.4 39 69.2
Sc06g0005240 Simmondsia chinensis HOM05D002211 ORTHO05D002206 3.9e-08 62.4 53 60.4
CiPaw.14G043400 Carya illinoinensis HOM05D002211 ORTHO05D002206 5.0e-08 62.0 150 30.0
DCAR_012692 Daucus carota HOM05D002211 ORTHO05D002206 5.0e-08 62.0 162 33.3
vmacro10391 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 5.0e-08 62.0 173 30.6
Gorai.013G198900 Gossypium raimondii HOM05D002211 ORTHO05D002206 6.6e-08 61.6 39 69.2
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 6.6e-08 61.6 154 29.9
SalBow1G4707 Salvia bowleyana HOM05D002211 ORTHO05D002206 6.6e-08 61.6 34 79.4
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 8.6e-08 61.2 160 30.6
Gohir.D10G077733 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.1e-07 60.8 39 66.7
PSO675G4717 Papaver somniferum HOM05D002211 ORTHO05D002206 1.1e-07 60.8 34 76.5
Actinidia23360 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.5e-07 60.5 142 31.7
Cpa.g.sc8.75 Carica papaya HOM05D002211 ORTHO05D002206 1.5e-07 60.5 158 34.8
Gohir.D10G077875 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.5e-07 60.5 39 66.7
Atru.chr6.3550 Acer truncatum HOM05D002211 ORTHO05D002206 1.9e-07 60.1 148 28.4
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.9e-07 60.1 165 32.1
CSS0000478 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 1.9e-07 60.1 167 32.3
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 1.9e-07 60.1 162 30.9
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 1.9e-07 60.1 162 31.5
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.5e-07 59.7 155 30.3
Glyma.20G220500 Glycine max HOM05D002211 ORTHO05D002206 2.5e-07 59.7 165 30.9
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 2.5e-07 59.7 152 30.3
CiPaw.13G055000 Carya illinoinensis HOM05D002211 ORTHO05D002206 3.3e-07 59.3 155 29.0
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 3.3e-07 59.3 153 31.4
FAN09G3091 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.3e-07 59.3 216 27.3
TAR636G2930 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.3e-07 59.3 142 34.5
VMungo0720G3084 Vigna mungo HOM05D002211 ORTHO05D002206 3.3e-07 59.3 143 32.9
DCAR_005529 Daucus carota HOM05D002211 ORTHO05D002206 4.3e-07 58.9 169 30.2
Cc09_g03180 Coffea canephora HOM05D002211 ORTHO05D002206 5.6e-07 58.5 256 28.1
HPP92_009930 Vanilla planifolia HOM05D043774 ORTHO05D002206 5.6e-07 58.5 153 30.7
arahy.Tifrunner.gnm1.ann1.TRRB3R Arachis hypogaea HOM05D002211 ORTHO05D002206 9.5e-07 57.8 78 47.4
Gorai.N003500 Gossypium raimondii HOM05D002211 ORTHO05D002206 9.5e-07 57.8 163 30.7
Potri.015G040500 Populus trichocarpa HOM05D002211 ORTHO05D002206 1.2e-06 57.4 35 62.9
Actinidia38919 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.6e-06 57.0 35 68.6
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.6e-06 57.0 159 27.7
Nitab4.5_0000504g0030 Nicotiana tabacum HOM05D002211 ORTHO05D002206 1.6e-06 57.0 157 33.1
PSO017G2189 Papaver somniferum HOM05D002211 ORTHO05D002206 1.6e-06 57.0 87 36.8
Psat3g004920 Pisum sativum HOM05D002211 ORTHO05D002206 1.6e-06 57.0 147 31.3
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.1e-06 56.6 159 28.9
CDE02G4254 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 2.8e-06 56.2 150 28.7
Gohir.D07G167000 Gossypium hirsutum HOM05D002211 ORTHO05D002206 2.8e-06 56.2 162 30.9
PGSC0003DMG400006602 Solanum tuberosum HOM05D002211 ORTHO05D002206 2.8e-06 56.2 157 34.4
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 3.6e-06 55.8 154 31.2
CDE11G1194 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 4.7e-06 55.5 162 29.0
VMungo1383G1511 Vigna mungo HOM05D002211 ORTHO05D002206 4.7e-06 55.5 160 30.0
CANSAT01G1044 Cannabis sativa HOM05D002211 ORTHO05D002206 6.2e-06 55.1 151 26.5
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.2e-06 55.1 159 28.3
Solyc06g083080.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 8.0e-06 54.7 165 29.1


User provided reference genes

Program Settings